miRNA display CGI


Results 61 - 80 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 5' -45.3 NC_005902.1 + 86056 0.71 0.99719
Target:  5'- -aUAUAUAGCUUAGaUgUUAAAGGGg -3'
miRNA:   3'- acAUAUGUCGAAUCcAgAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 148162 0.71 0.99719
Target:  5'- cUGUaaGUGCAGCgaaugcUAGGaUUUAAAGGGUa -3'
miRNA:   3'- -ACA--UAUGUCGa-----AUCCaGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 144059 0.71 0.99719
Target:  5'- aGUAUAUAGCUUAGGUgUUAAAc--- -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUccca -5'
28250 5' -45.3 NC_005902.1 + 100136 0.71 0.99719
Target:  5'- -aUAUAUAGCUUAGaUgUUAAAGGGg -3'
miRNA:   3'- acAUAUGUCGAAUCcAgAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 173498 0.71 0.99719
Target:  5'- uUGUAUAUAaUUUAGGUaUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 5690 0.71 0.99719
Target:  5'- uUGUAUAUAGCUUAGGggUUAAAGa-- -3'
miRNA:   3'- -ACAUAUGUCGAAUCCagAAUUUCcca -5'
28250 5' -45.3 NC_005902.1 + 116855 0.71 0.99719
Target:  5'- cUGUucAUAUAGCUUAGaUgUUAAAGGGUu -3'
miRNA:   3'- -ACA--UAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 170619 0.72 0.996656
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGaGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCcCA- -5'
28250 5' -45.3 NC_005902.1 + 156829 0.72 0.996656
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGaGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCcCA- -5'
28250 5' -45.3 NC_005902.1 + 134368 0.72 0.996656
Target:  5'- aGUAUAUAGCUUAaGUgUUaAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUcCAgAA-UUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 15341 0.72 0.996656
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGaGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCcCA- -5'
28250 5' -45.3 NC_005902.1 + 22594 0.72 0.996656
Target:  5'- -uUAUAUAGcCUUAGGaUUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUC-GAAUCCaGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 85373 0.72 0.996042
Target:  5'- -aUAUAUAGCUUAGauaUUAAAGGGUa -3'
miRNA:   3'- acAUAUGUCGAAUCcagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 110217 0.72 0.995338
Target:  5'- aGUAUAUAuaaUUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUc--GAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 29255 0.72 0.995338
Target:  5'- aGUAUAUAGCUUAGGUgUU--AGGa- -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAuuUCCca -5'
28250 5' -45.3 NC_005902.1 + 114842 0.72 0.994535
Target:  5'- uUGUAUAUAGCUUaaguguuaaaaAGGU--UAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAA-----------UCCAgaAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 50495 0.72 0.994535
Target:  5'- gUGUGUAUcuAGUUUAGGUgUUAAAGGa- -3'
miRNA:   3'- -ACAUAUG--UCGAAUCCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 180393 0.73 0.993624
Target:  5'- aGUAUAUAGCUUAauUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUccAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 145976 0.73 0.992595
Target:  5'- -aUAUAUAGCUUAaGUgUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 74813 0.73 0.992595
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAaGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUcCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.