miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28251 5' -45.7 NC_005902.1 + 11449 0.71 0.997035
Target:  5'- cGUA--UAUAGCUUAGGUGuUAACUCg- -3'
miRNA:   3'- -CAUacAUAUCGAAUCCAC-AUUGGGaa -5'
28251 5' -45.7 NC_005902.1 + 15343 0.74 0.972335
Target:  5'- ----aUAUAGCUUAGGUGUuaaagaguuaAACCCUa -3'
miRNA:   3'- cauacAUAUCGAAUCCACA----------UUGGGAa -5'
28251 5' -45.7 NC_005902.1 + 20093 0.68 0.999768
Target:  5'- uGUAUaUAUAGCUUaaguauuaaaAGGUGUuuACCCUUu -3'
miRNA:   3'- -CAUAcAUAUCGAA----------UCCACAu-UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 20153 0.69 0.999215
Target:  5'- cGUA--UAUAGCUUAGGUGUuaaaggguauucACCCUUu -3'
miRNA:   3'- -CAUacAUAUCGAAUCCACAu-----------UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 20322 0.69 0.99937
Target:  5'- uGUAUaUAUAGCUUAGGUGUuaauagauaaauACCUUUu -3'
miRNA:   3'- -CAUAcAUAUCGAAUCCACAu-----------UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 23322 0.66 0.999988
Target:  5'- aUAUGU--AGCUUAGGUauaagGUAaauACCCUUu -3'
miRNA:   3'- cAUACAuaUCGAAUCCA-----CAU---UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 28964 0.8 0.785186
Target:  5'- --cUGUAUAGCUUAGGUGUuAACaCCUa -3'
miRNA:   3'- cauACAUAUCGAAUCCACA-UUG-GGAa -5'
28251 5' -45.7 NC_005902.1 + 34852 0.66 0.999983
Target:  5'- cUAUaUAUAaCUUAGGUGuUAACCCUUu -3'
miRNA:   3'- cAUAcAUAUcGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 40703 0.66 0.999987
Target:  5'- aGUGUGUAuaUAGCUUAGauaaagaGUGaauACCCUUu -3'
miRNA:   3'- -CAUACAU--AUCGAAUC-------CACau-UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 40947 0.77 0.923625
Target:  5'- -aAUGUAUAGCUUGGGUauucACCCUUu -3'
miRNA:   3'- caUACAUAUCGAAUCCAcau-UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 42400 0.74 0.969213
Target:  5'- aGUA--UAUAGCUUAGGUGUcaaucuuuuaAACCCUg -3'
miRNA:   3'- -CAUacAUAUCGAAUCCACA----------UUGGGAa -5'
28251 5' -45.7 NC_005902.1 + 43773 0.7 0.998295
Target:  5'- aGUA--UAUAGCaUAGGUGUuuAACCCUUu -3'
miRNA:   3'- -CAUacAUAUCGaAUCCACA--UUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 50083 0.71 0.996474
Target:  5'- uUGUaUAUAGCUUAGGUauUAACCCUUu -3'
miRNA:   3'- cAUAcAUAUCGAAUCCAc-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 50227 0.66 0.999988
Target:  5'- cUAUaUAUAGCUUAGGUGUuaaagagcuAACuCCUc -3'
miRNA:   3'- cAUAcAUAUCGAAUCCACA---------UUG-GGAa -5'
28251 5' -45.7 NC_005902.1 + 50494 0.74 0.971729
Target:  5'- uGUGUGUAucUAGUUUAGGUGUuaaaggauaaauACCCUUu -3'
miRNA:   3'- -CAUACAU--AUCGAAUCCACAu-----------UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 52417 0.75 0.962234
Target:  5'- aGUAUGUAuaUAGCUUAaGUGuUAACCCUUu -3'
miRNA:   3'- -CAUACAU--AUCGAAUcCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 54083 0.68 0.999862
Target:  5'- ----aUAUAGUUUAGGUGuUAACUCUUu -3'
miRNA:   3'- cauacAUAUCGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 54375 0.75 0.954224
Target:  5'- uGUAUGUAUAGCUUAGGUGUu------ -3'
miRNA:   3'- -CAUACAUAUCGAAUCCACAuugggaa -5'
28251 5' -45.7 NC_005902.1 + 74810 0.67 0.999911
Target:  5'- uGUAUaUAUAGCUUAGGUGUuaaaagguuaauUCCUUa -3'
miRNA:   3'- -CAUAcAUAUCGAAUCCACAuu----------GGGAA- -5'
28251 5' -45.7 NC_005902.1 + 76004 0.73 0.980324
Target:  5'- aGUA--UAUAGCUUAGuUGUAACCCUUu -3'
miRNA:   3'- -CAUacAUAUCGAAUCcACAUUGGGAA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.