miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28251 5' -45.7 NC_005902.1 + 142024 0.7 0.998945
Target:  5'- cGUGUaUAUAGCUUAGGUGUuaaaagguauuuuuAUCCUUu -3'
miRNA:   3'- -CAUAcAUAUCGAAUCCACAu-------------UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 28964 0.8 0.785186
Target:  5'- --cUGUAUAGCUUAGGUGUuAACaCCUa -3'
miRNA:   3'- cauACAUAUCGAAUCCACA-UUG-GGAa -5'
28251 5' -45.7 NC_005902.1 + 162630 0.8 0.795097
Target:  5'- uUGUaUAUAGCUUGGGUGuUAACCCUUu -3'
miRNA:   3'- cAUAcAUAUCGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 50494 0.74 0.971729
Target:  5'- uGUGUGUAucUAGUUUAGGUGUuaaaggauaaauACCCUUu -3'
miRNA:   3'- -CAUACAU--AUCGAAUCCACAu-----------UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 85941 0.74 0.977881
Target:  5'- ----aUAUAGCUUAGGUGuUAAUCCUUu -3'
miRNA:   3'- cauacAUAUCGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 163430 0.79 0.823742
Target:  5'- ----aUAUAGCUUAGGUGuUAACCCUUu -3'
miRNA:   3'- cauacAUAUCGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 170617 0.75 0.949818
Target:  5'- uUAUaUAUAGCUUAGGUGUuaaagaguuaAACCCUa -3'
miRNA:   3'- cAUAcAUAUCGAAUCCACA----------UUGGGAa -5'
28251 5' -45.7 NC_005902.1 + 52417 0.75 0.962234
Target:  5'- aGUAUGUAuaUAGCUUAaGUGuUAACCCUUu -3'
miRNA:   3'- -CAUACAU--AUCGAAUcCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 149241 0.7 0.998295
Target:  5'- cUGUGUAUAGCUUAaGUGUuaaaagguuAAUCCUUa -3'
miRNA:   3'- cAUACAUAUCGAAUcCACA---------UUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 54083 0.68 0.999862
Target:  5'- ----aUAUAGUUUAGGUGuUAACUCUUu -3'
miRNA:   3'- cauacAUAUCGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 95441 0.66 0.999991
Target:  5'- -------cAGCUUAGGUGUuuuACCCc- -3'
miRNA:   3'- cauacauaUCGAAUCCACAu--UGGGaa -5'
28251 5' -45.7 NC_005902.1 + 40947 0.77 0.923625
Target:  5'- -aAUGUAUAGCUUGGGUauucACCCUUu -3'
miRNA:   3'- caUACAUAUCGAAUCCAcau-UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 137475 0.79 0.850536
Target:  5'- uUGUGUAUAGUUUAGGUauUAACCCUUu -3'
miRNA:   3'- cAUACAUAUCGAAUCCAc-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 157890 0.7 0.99786
Target:  5'- ----aUAUAGCUUAGGUGUuaaaagauaaauACCCUUu -3'
miRNA:   3'- cauacAUAUCGAAUCCACAu-----------UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 43773 0.7 0.998295
Target:  5'- aGUA--UAUAGCaUAGGUGUuuAACCCUUu -3'
miRNA:   3'- -CAUacAUAUCGaAUCCACA--UUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 162432 0.76 0.939157
Target:  5'- uGUGUGUAUAGCUUAGGUGUuaaagaguaaauACUUUUu -3'
miRNA:   3'- -CAUACAUAUCGAAUCCACAu-----------UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 20322 0.69 0.99937
Target:  5'- uGUAUaUAUAGCUUAGGUGUuaauagauaaauACCUUUu -3'
miRNA:   3'- -CAUAcAUAUCGAAUCCACAu-----------UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 74810 0.67 0.999911
Target:  5'- uGUAUaUAUAGCUUAGGUGUuaaaagguuaauUCCUUa -3'
miRNA:   3'- -CAUAcAUAUCGAAUCCACAuu----------GGGAA- -5'
28251 5' -45.7 NC_005902.1 + 54375 0.75 0.954224
Target:  5'- uGUAUGUAUAGCUUAGGUGUu------ -3'
miRNA:   3'- -CAUACAUAUCGAAUCCACAuugggaa -5'
28251 5' -45.7 NC_005902.1 + 50083 0.71 0.996474
Target:  5'- uUGUaUAUAGCUUAGGUauUAACCCUUu -3'
miRNA:   3'- cAUAcAUAUCGAAUCCAc-AUUGGGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.