miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28251 5' -45.7 NC_005902.1 + 15343 0.74 0.972335
Target:  5'- ----aUAUAGCUUAGGUGUuaaagaguuaAACCCUa -3'
miRNA:   3'- cauacAUAUCGAAUCCACA----------UUGGGAa -5'
28251 5' -45.7 NC_005902.1 + 153062 0.7 0.998598
Target:  5'- -aGUGaguaUAUAGUUUAGGUGuUAACCCc- -3'
miRNA:   3'- caUAC----AUAUCGAAUCCAC-AUUGGGaa -5'
28251 5' -45.7 NC_005902.1 + 184840 0.7 0.997938
Target:  5'- --uUGUAUAuaaCUUAGGUGuUAACCCUUu -3'
miRNA:   3'- cauACAUAUc--GAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 11449 0.71 0.997035
Target:  5'- cGUA--UAUAGCUUAGGUGuUAACUCg- -3'
miRNA:   3'- -CAUacAUAUCGAAUCCAC-AUUGGGaa -5'
28251 5' -45.7 NC_005902.1 + 95442 0.72 0.993289
Target:  5'- -------aAGCUUAGGUGuUAACCCUUu -3'
miRNA:   3'- cauacauaUCGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 179788 0.73 0.980324
Target:  5'- uGUAUaUAUGGCUUcGGUGuUAACCCUUu -3'
miRNA:   3'- -CAUAcAUAUCGAAuCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 76004 0.73 0.980324
Target:  5'- aGUA--UAUAGCUUAGuUGUAACCCUUu -3'
miRNA:   3'- -CAUacAUAUCGAAUCcACAUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 100021 0.74 0.977881
Target:  5'- ----aUAUAGCUUAGGUGuUAAUCCUUu -3'
miRNA:   3'- cauacAUAUCGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 97750 0.74 0.977881
Target:  5'- ----aUAUAGCUUAGGUGuUAAUCCUUu -3'
miRNA:   3'- cauacAUAUCGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 157211 0.7 0.998854
Target:  5'- ----aUAUAGCUUAGGUauUAACCCUUu -3'
miRNA:   3'- cauacAUAUCGAAUCCAc-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 138801 0.7 0.998854
Target:  5'- aGUGUGUAuaUAGCUUAGGUGUuaaaggguuaAGCUa-- -3'
miRNA:   3'- -CAUACAU--AUCGAAUCCACA----------UUGGgaa -5'
28251 5' -45.7 NC_005902.1 + 182964 0.69 0.999069
Target:  5'- uGUAUaUAUAGCUUAGGUGUuaAAUCgUUa -3'
miRNA:   3'- -CAUAcAUAUCGAAUCCACA--UUGGgAA- -5'
28251 5' -45.7 NC_005902.1 + 23322 0.66 0.999988
Target:  5'- aUAUGU--AGCUUAGGUauaagGUAaauACCCUUu -3'
miRNA:   3'- cAUACAuaUCGAAUCCA-----CAU---UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 104759 0.66 0.999977
Target:  5'- uUGUaUAUAGCUUAGaUGuUAACCCUUu -3'
miRNA:   3'- cAUAcAUAUCGAAUCcAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 135930 0.67 0.999956
Target:  5'- aGUAUGU--AGCUUAGGUGUuagGAUCa-- -3'
miRNA:   3'- -CAUACAuaUCGAAUCCACA---UUGGgaa -5'
28251 5' -45.7 NC_005902.1 + 86485 0.67 0.999921
Target:  5'- aGUA--UAUAGCUUAGGUGUuaaaggguuaAACCUa- -3'
miRNA:   3'- -CAUacAUAUCGAAUCCACA----------UUGGGaa -5'
28251 5' -45.7 NC_005902.1 + 158165 0.67 0.999895
Target:  5'- ----aUAUAGCUUAGGcauUAACCCUUu -3'
miRNA:   3'- cauacAUAUCGAAUCCac-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 88603 0.67 0.999889
Target:  5'- aGUAaGUAUAGCUUAGGUGUuaaaggguaaauAUCUUUu -3'
miRNA:   3'- -CAUaCAUAUCGAAUCCACAu-----------UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 20093 0.68 0.999768
Target:  5'- uGUAUaUAUAGCUUaaguauuaaaAGGUGUuuACCCUUu -3'
miRNA:   3'- -CAUAcAUAUCGAA----------UCCACAu-UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 140962 0.69 0.99937
Target:  5'- aGUA--UAUAGCUUAGGUGUuaaaagguaaacACCCUUu -3'
miRNA:   3'- -CAUacAUAUCGAAUCCACAu-----------UGGGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.