miRNA display CGI


Results 21 - 40 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28251 5' -45.7 NC_005902.1 + 154952 0.66 0.999988
Target:  5'- --uUGUucAUAGCUUGGGUGUuaaaaggugAACaCCUa -3'
miRNA:   3'- cauACA--UAUCGAAUCCACA---------UUG-GGAa -5'
28251 5' -45.7 NC_005902.1 + 136284 0.66 0.999983
Target:  5'- ----aUAUAGUUUAGGUGUugagaugaauACCCUUc -3'
miRNA:   3'- cauacAUAUCGAAUCCACAu---------UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 20322 0.69 0.99937
Target:  5'- uGUAUaUAUAGCUUAGGUGUuaauagauaaauACCUUUu -3'
miRNA:   3'- -CAUAcAUAUCGAAUCCACAu-----------UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 34852 0.66 0.999983
Target:  5'- cUAUaUAUAaCUUAGGUGuUAACCCUUu -3'
miRNA:   3'- cAUAcAUAUcGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 169577 0.66 0.999987
Target:  5'- -aGUGUAUAGUUUAGGUGUuaaaagguaaauACUUUUu -3'
miRNA:   3'- caUACAUAUCGAAUCCACAu-----------UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 167185 0.66 0.999968
Target:  5'- cGUA--UAUAGCUUAGGUGUuaaaagguuAACuCCUa -3'
miRNA:   3'- -CAUacAUAUCGAAUCCACA---------UUG-GGAa -5'
28251 5' -45.7 NC_005902.1 + 95441 0.66 0.999991
Target:  5'- -------cAGCUUAGGUGUuuuACCCc- -3'
miRNA:   3'- cauacauaUCGAAUCCACAu--UGGGaa -5'
28251 5' -45.7 NC_005902.1 + 54083 0.68 0.999862
Target:  5'- ----aUAUAGUUUAGGUGuUAACUCUUu -3'
miRNA:   3'- cauacAUAUCGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 157211 0.7 0.998854
Target:  5'- ----aUAUAGCUUAGGUauUAACCCUUu -3'
miRNA:   3'- cauacAUAUCGAAUCCAc-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 23322 0.66 0.999988
Target:  5'- aUAUGU--AGCUUAGGUauaagGUAaauACCCUUu -3'
miRNA:   3'- cAUACAuaUCGAAUCCA-----CAU---UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 86485 0.67 0.999921
Target:  5'- aGUA--UAUAGCUUAGGUGUuaaaggguuaAACCUa- -3'
miRNA:   3'- -CAUacAUAUCGAAUCCACA----------UUGGGaa -5'
28251 5' -45.7 NC_005902.1 + 158165 0.67 0.999895
Target:  5'- ----aUAUAGCUUAGGcauUAACCCUUu -3'
miRNA:   3'- cauacAUAUCGAAUCCac-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 20093 0.68 0.999768
Target:  5'- uGUAUaUAUAGCUUaaguauuaaaAGGUGUuuACCCUUu -3'
miRNA:   3'- -CAUAcAUAUCGAA----------UCCACAu-UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 138801 0.7 0.998854
Target:  5'- aGUGUGUAuaUAGCUUAGGUGUuaaaggguuaAGCUa-- -3'
miRNA:   3'- -CAUACAU--AUCGAAUCCACA----------UUGGgaa -5'
28251 5' -45.7 NC_005902.1 + 97750 0.74 0.977881
Target:  5'- ----aUAUAGCUUAGGUGuUAAUCCUUu -3'
miRNA:   3'- cauacAUAUCGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 153062 0.7 0.998598
Target:  5'- -aGUGaguaUAUAGUUUAGGUGuUAACCCc- -3'
miRNA:   3'- caUAC----AUAUCGAAUCCAC-AUUGGGaa -5'
28251 5' -45.7 NC_005902.1 + 184840 0.7 0.997938
Target:  5'- --uUGUAUAuaaCUUAGGUGuUAACCCUUu -3'
miRNA:   3'- cauACAUAUc--GAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 157064 0.85 0.524855
Target:  5'- uUGUGUAUAGCUUAGGUGUuAACaCCUa -3'
miRNA:   3'- cAUACAUAUCGAAUCCACA-UUG-GGAa -5'
28251 5' -45.7 NC_005902.1 + 131701 0.75 0.954224
Target:  5'- aUAUaUAUAGCUUAGGUGuUAAUCCUUu -3'
miRNA:   3'- cAUAcAUAUCGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 127657 0.75 0.962234
Target:  5'- -aAUGUAUAGUUUAGGUaucAACCCUUu -3'
miRNA:   3'- caUACAUAUCGAAUCCAca-UUGGGAA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.