miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28251 5' -45.7 NC_005902.1 + 20322 0.69 0.99937
Target:  5'- uGUAUaUAUAGCUUAGGUGUuaauagauaaauACCUUUu -3'
miRNA:   3'- -CAUAcAUAUCGAAUCCACAu-----------UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 40703 0.66 0.999987
Target:  5'- aGUGUGUAuaUAGCUUAGauaaagaGUGaauACCCUUu -3'
miRNA:   3'- -CAUACAU--AUCGAAUC-------CACau-UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 50494 0.74 0.971729
Target:  5'- uGUGUGUAucUAGUUUAGGUGUuaaaggauaaauACCCUUu -3'
miRNA:   3'- -CAUACAU--AUCGAAUCCACAu-----------UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 54083 0.68 0.999862
Target:  5'- ----aUAUAGUUUAGGUGuUAACUCUUu -3'
miRNA:   3'- cauacAUAUCGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 34852 0.66 0.999983
Target:  5'- cUAUaUAUAaCUUAGGUGuUAACCCUUu -3'
miRNA:   3'- cAUAcAUAUcGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 50227 0.66 0.999988
Target:  5'- cUAUaUAUAGCUUAGGUGUuaaagagcuAACuCCUc -3'
miRNA:   3'- cAUAcAUAUCGAAUCCACA---------UUG-GGAa -5'
28251 5' -45.7 NC_005902.1 + 142024 0.7 0.998945
Target:  5'- cGUGUaUAUAGCUUAGGUGUuaaaagguauuuuuAUCCUUu -3'
miRNA:   3'- -CAUAcAUAUCGAAUCCACAu-------------UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 74810 0.67 0.999911
Target:  5'- uGUAUaUAUAGCUUAGGUGUuaaaagguuaauUCCUUa -3'
miRNA:   3'- -CAUAcAUAUCGAAUCCACAuu----------GGGAA- -5'
28251 5' -45.7 NC_005902.1 + 153062 0.7 0.998598
Target:  5'- -aGUGaguaUAUAGUUUAGGUGuUAACCCc- -3'
miRNA:   3'- caUAC----AUAUCGAAUCCAC-AUUGGGaa -5'
28251 5' -45.7 NC_005902.1 + 104759 0.66 0.999977
Target:  5'- uUGUaUAUAGCUUAGaUGuUAACCCUUu -3'
miRNA:   3'- cAUAcAUAUCGAAUCcAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 11449 0.71 0.997035
Target:  5'- cGUA--UAUAGCUUAGGUGuUAACUCg- -3'
miRNA:   3'- -CAUacAUAUCGAAUCCAC-AUUGGGaa -5'
28251 5' -45.7 NC_005902.1 + 42400 0.74 0.969213
Target:  5'- aGUA--UAUAGCUUAGGUGUcaaucuuuuaAACCCUg -3'
miRNA:   3'- -CAUacAUAUCGAAUCCACA----------UUGGGAa -5'
28251 5' -45.7 NC_005902.1 + 158165 0.67 0.999895
Target:  5'- ----aUAUAGCUUAGGcauUAACCCUUu -3'
miRNA:   3'- cauacAUAUCGAAUCCac-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 127657 0.75 0.962234
Target:  5'- -aAUGUAUAGUUUAGGUaucAACCCUUu -3'
miRNA:   3'- caUACAUAUCGAAUCCAca-UUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 88603 0.67 0.999889
Target:  5'- aGUAaGUAUAGCUUAGGUGUuaaaggguaaauAUCUUUu -3'
miRNA:   3'- -CAUaCAUAUCGAAUCCACAu-----------UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 131701 0.75 0.954224
Target:  5'- aUAUaUAUAGCUUAGGUGuUAAUCCUUu -3'
miRNA:   3'- cAUAcAUAUCGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 157064 0.85 0.524855
Target:  5'- uUGUGUAUAGCUUAGGUGUuAACaCCUa -3'
miRNA:   3'- cAUACAUAUCGAAUCCACA-UUG-GGAa -5'
28251 5' -45.7 NC_005902.1 + 182662 1.05 0.046332
Target:  5'- uGUAUGUAUAGCUUAGGUGUAACCCUUu -3'
miRNA:   3'- -CAUACAUAUCGAAUCCACAUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 184840 0.7 0.997938
Target:  5'- --uUGUAUAuaaCUUAGGUGuUAACCCUUu -3'
miRNA:   3'- cauACAUAUc--GAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 157211 0.7 0.998854
Target:  5'- ----aUAUAGCUUAGGUauUAACCCUUu -3'
miRNA:   3'- cauacAUAUCGAAUCCAc-AUUGGGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.