Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28251 | 5' | -45.7 | NC_005902.1 | + | 179788 | 0.73 | 0.980324 |
Target: 5'- uGUAUaUAUGGCUUcGGUGuUAACCCUUu -3' miRNA: 3'- -CAUAcAUAUCGAAuCCAC-AUUGGGAA- -5' |
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28251 | 5' | -45.7 | NC_005902.1 | + | 95442 | 0.72 | 0.993289 |
Target: 5'- -------aAGCUUAGGUGuUAACCCUUu -3' miRNA: 3'- cauacauaUCGAAUCCAC-AUUGGGAA- -5' |
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28251 | 5' | -45.7 | NC_005902.1 | + | 11449 | 0.71 | 0.997035 |
Target: 5'- cGUA--UAUAGCUUAGGUGuUAACUCg- -3' miRNA: 3'- -CAUacAUAUCGAAUCCAC-AUUGGGaa -5' |
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28251 | 5' | -45.7 | NC_005902.1 | + | 50083 | 0.71 | 0.996474 |
Target: 5'- uUGUaUAUAGCUUAGGUauUAACCCUUu -3' miRNA: 3'- cAUAcAUAUCGAAUCCAc-AUUGGGAA- -5' |
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28251 | 5' | -45.7 | NC_005902.1 | + | 149241 | 0.7 | 0.998295 |
Target: 5'- cUGUGUAUAGCUUAaGUGUuaaaagguuAAUCCUUa -3' miRNA: 3'- cAUACAUAUCGAAUcCACA---------UUGGGAA- -5' |
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28251 | 5' | -45.7 | NC_005902.1 | + | 157890 | 0.7 | 0.99786 |
Target: 5'- ----aUAUAGCUUAGGUGUuaaaagauaaauACCCUUu -3' miRNA: 3'- cauacAUAUCGAAUCCACAu-----------UGGGAA- -5' |
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28251 | 5' | -45.7 | NC_005902.1 | + | 43773 | 0.7 | 0.998295 |
Target: 5'- aGUA--UAUAGCaUAGGUGUuuAACCCUUu -3' miRNA: 3'- -CAUacAUAUCGaAUCCACA--UUGGGAA- -5' |
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28251 | 5' | -45.7 | NC_005902.1 | + | 184840 | 0.7 | 0.997938 |
Target: 5'- --uUGUAUAuaaCUUAGGUGuUAACCCUUu -3' miRNA: 3'- cauACAUAUc--GAAUCCAC-AUUGGGAA- -5' |
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28251 | 5' | -45.7 | NC_005902.1 | + | 153062 | 0.7 | 0.998598 |
Target: 5'- -aGUGaguaUAUAGUUUAGGUGuUAACCCc- -3' miRNA: 3'- caUAC----AUAUCGAAUCCAC-AUUGGGaa -5' |
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28251 | 5' | -45.7 | NC_005902.1 | + | 157211 | 0.7 | 0.998854 |
Target: 5'- ----aUAUAGCUUAGGUauUAACCCUUu -3' miRNA: 3'- cauacAUAUCGAAUCCAc-AUUGGGAA- -5' |
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28251 | 5' | -45.7 | NC_005902.1 | + | 138801 | 0.7 | 0.998854 |
Target: 5'- aGUGUGUAuaUAGCUUAGGUGUuaaaggguuaAGCUa-- -3' miRNA: 3'- -CAUACAU--AUCGAAUCCACA----------UUGGgaa -5' |
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28251 | 5' | -45.7 | NC_005902.1 | + | 142024 | 0.7 | 0.998945 |
Target: 5'- cGUGUaUAUAGCUUAGGUGUuaaaagguauuuuuAUCCUUu -3' miRNA: 3'- -CAUAcAUAUCGAAUCCACAu-------------UGGGAA- -5' |
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28251 | 5' | -45.7 | NC_005902.1 | + | 182964 | 0.69 | 0.999069 |
Target: 5'- uGUAUaUAUAGCUUAGGUGUuaAAUCgUUa -3' miRNA: 3'- -CAUAcAUAUCGAAUCCACA--UUGGgAA- -5' |
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28251 | 5' | -45.7 | NC_005902.1 | + | 140962 | 0.69 | 0.99937 |
Target: 5'- aGUA--UAUAGCUUAGGUGUuaaaagguaaacACCCUUu -3' miRNA: 3'- -CAUacAUAUCGAAUCCACAu-----------UGGGAA- -5' |
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28251 | 5' | -45.7 | NC_005902.1 | + | 20322 | 0.69 | 0.99937 |
Target: 5'- uGUAUaUAUAGCUUAGGUGUuaauagauaaauACCUUUu -3' miRNA: 3'- -CAUAcAUAUCGAAUCCACAu-----------UGGGAA- -5' |
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28251 | 5' | -45.7 | NC_005902.1 | + | 20153 | 0.69 | 0.999215 |
Target: 5'- cGUA--UAUAGCUUAGGUGUuaaaggguauucACCCUUu -3' miRNA: 3'- -CAUacAUAUCGAAUCCACAu-----------UGGGAA- -5' |
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28251 | 5' | -45.7 | NC_005902.1 | + | 20093 | 0.68 | 0.999768 |
Target: 5'- uGUAUaUAUAGCUUaaguauuaaaAGGUGUuuACCCUUu -3' miRNA: 3'- -CAUAcAUAUCGAA----------UCCACAu-UGGGAA- -5' |
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28251 | 5' | -45.7 | NC_005902.1 | + | 54083 | 0.68 | 0.999862 |
Target: 5'- ----aUAUAGUUUAGGUGuUAACUCUUu -3' miRNA: 3'- cauacAUAUCGAAUCCAC-AUUGGGAA- -5' |
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28251 | 5' | -45.7 | NC_005902.1 | + | 88603 | 0.67 | 0.999889 |
Target: 5'- aGUAaGUAUAGCUUAGGUGUuaaaggguaaauAUCUUUu -3' miRNA: 3'- -CAUaCAUAUCGAAUCCACAu-----------UGGGAA- -5' |
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28251 | 5' | -45.7 | NC_005902.1 | + | 158165 | 0.67 | 0.999895 |
Target: 5'- ----aUAUAGCUUAGGcauUAACCCUUu -3' miRNA: 3'- cauacAUAUCGAAUCCac-AUUGGGAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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