miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28251 5' -45.7 NC_005902.1 + 138801 0.7 0.998854
Target:  5'- aGUGUGUAuaUAGCUUAGGUGUuaaaggguuaAGCUa-- -3'
miRNA:   3'- -CAUACAU--AUCGAAUCCACA----------UUGGgaa -5'
28251 5' -45.7 NC_005902.1 + 137475 0.79 0.850536
Target:  5'- uUGUGUAUAGUUUAGGUauUAACCCUUu -3'
miRNA:   3'- cAUACAUAUCGAAUCCAc-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 136284 0.66 0.999983
Target:  5'- ----aUAUAGUUUAGGUGUugagaugaauACCCUUc -3'
miRNA:   3'- cauacAUAUCGAAUCCACAu---------UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 135930 0.67 0.999956
Target:  5'- aGUAUGU--AGCUUAGGUGUuagGAUCa-- -3'
miRNA:   3'- -CAUACAuaUCGAAUCCACA---UUGGgaa -5'
28251 5' -45.7 NC_005902.1 + 131701 0.75 0.954224
Target:  5'- aUAUaUAUAGCUUAGGUGuUAAUCCUUu -3'
miRNA:   3'- cAUAcAUAUCGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 127657 0.75 0.962234
Target:  5'- -aAUGUAUAGUUUAGGUaucAACCCUUu -3'
miRNA:   3'- caUACAUAUCGAAUCCAca-UUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 104759 0.66 0.999977
Target:  5'- uUGUaUAUAGCUUAGaUGuUAACCCUUu -3'
miRNA:   3'- cAUAcAUAUCGAAUCcAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 100021 0.74 0.977881
Target:  5'- ----aUAUAGCUUAGGUGuUAAUCCUUu -3'
miRNA:   3'- cauacAUAUCGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 97750 0.74 0.977881
Target:  5'- ----aUAUAGCUUAGGUGuUAAUCCUUu -3'
miRNA:   3'- cauacAUAUCGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 95442 0.72 0.993289
Target:  5'- -------aAGCUUAGGUGuUAACCCUUu -3'
miRNA:   3'- cauacauaUCGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 95441 0.66 0.999991
Target:  5'- -------cAGCUUAGGUGUuuuACCCc- -3'
miRNA:   3'- cauacauaUCGAAUCCACAu--UGGGaa -5'
28251 5' -45.7 NC_005902.1 + 88603 0.67 0.999889
Target:  5'- aGUAaGUAUAGCUUAGGUGUuaaaggguaaauAUCUUUu -3'
miRNA:   3'- -CAUaCAUAUCGAAUCCACAu-----------UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 86485 0.67 0.999921
Target:  5'- aGUA--UAUAGCUUAGGUGUuaaaggguuaAACCUa- -3'
miRNA:   3'- -CAUacAUAUCGAAUCCACA----------UUGGGaa -5'
28251 5' -45.7 NC_005902.1 + 85941 0.74 0.977881
Target:  5'- ----aUAUAGCUUAGGUGuUAAUCCUUu -3'
miRNA:   3'- cauacAUAUCGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 76004 0.73 0.980324
Target:  5'- aGUA--UAUAGCUUAGuUGUAACCCUUu -3'
miRNA:   3'- -CAUacAUAUCGAAUCcACAUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 74810 0.67 0.999911
Target:  5'- uGUAUaUAUAGCUUAGGUGUuaaaagguuaauUCCUUa -3'
miRNA:   3'- -CAUAcAUAUCGAAUCCACAuu----------GGGAA- -5'
28251 5' -45.7 NC_005902.1 + 54375 0.75 0.954224
Target:  5'- uGUAUGUAUAGCUUAGGUGUu------ -3'
miRNA:   3'- -CAUACAUAUCGAAUCCACAuugggaa -5'
28251 5' -45.7 NC_005902.1 + 54083 0.68 0.999862
Target:  5'- ----aUAUAGUUUAGGUGuUAACUCUUu -3'
miRNA:   3'- cauacAUAUCGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 52417 0.75 0.962234
Target:  5'- aGUAUGUAuaUAGCUUAaGUGuUAACCCUUu -3'
miRNA:   3'- -CAUACAU--AUCGAAUcCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 50494 0.74 0.971729
Target:  5'- uGUGUGUAucUAGUUUAGGUGUuaaaggauaaauACCCUUu -3'
miRNA:   3'- -CAUACAU--AUCGAAUCCACAu-----------UGGGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.