miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28251 5' -45.7 NC_005902.1 + 42400 0.74 0.969213
Target:  5'- aGUA--UAUAGCUUAGGUGUcaaucuuuuaAACCCUg -3'
miRNA:   3'- -CAUacAUAUCGAAUCCACA----------UUGGGAa -5'
28251 5' -45.7 NC_005902.1 + 127657 0.75 0.962234
Target:  5'- -aAUGUAUAGUUUAGGUaucAACCCUUu -3'
miRNA:   3'- caUACAUAUCGAAUCCAca-UUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 52417 0.75 0.962234
Target:  5'- aGUAUGUAuaUAGCUUAaGUGuUAACCCUUu -3'
miRNA:   3'- -CAUACAU--AUCGAAUcCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 131701 0.75 0.954224
Target:  5'- aUAUaUAUAGCUUAGGUGuUAAUCCUUu -3'
miRNA:   3'- cAUAcAUAUCGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 54375 0.75 0.954224
Target:  5'- uGUAUGUAUAGCUUAGGUGUu------ -3'
miRNA:   3'- -CAUACAUAUCGAAUCCACAuugggaa -5'
28251 5' -45.7 NC_005902.1 + 170617 0.75 0.949818
Target:  5'- uUAUaUAUAGCUUAGGUGUuaaagaguuaAACCCUa -3'
miRNA:   3'- cAUAcAUAUCGAAUCCACA----------UUGGGAa -5'
28251 5' -45.7 NC_005902.1 + 162432 0.76 0.939157
Target:  5'- uGUGUGUAUAGCUUAGGUGUuaaagaguaaauACUUUUu -3'
miRNA:   3'- -CAUACAUAUCGAAUCCACAu-----------UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 40947 0.77 0.923625
Target:  5'- -aAUGUAUAGCUUGGGUauucACCCUUu -3'
miRNA:   3'- caUACAUAUCGAAUCCAcau-UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 137475 0.79 0.850536
Target:  5'- uUGUGUAUAGUUUAGGUauUAACCCUUu -3'
miRNA:   3'- cAUACAUAUCGAAUCCAc-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 163430 0.79 0.823742
Target:  5'- ----aUAUAGCUUAGGUGuUAACCCUUu -3'
miRNA:   3'- cauacAUAUCGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 162630 0.8 0.795097
Target:  5'- uUGUaUAUAGCUUGGGUGuUAACCCUUu -3'
miRNA:   3'- cAUAcAUAUCGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 28964 0.8 0.785186
Target:  5'- --cUGUAUAGCUUAGGUGUuAACaCCUa -3'
miRNA:   3'- cauACAUAUCGAAUCCACA-UUG-GGAa -5'
28251 5' -45.7 NC_005902.1 + 157064 0.85 0.524855
Target:  5'- uUGUGUAUAGCUUAGGUGUuAACaCCUa -3'
miRNA:   3'- cAUACAUAUCGAAUCCACA-UUG-GGAa -5'
28251 5' -45.7 NC_005902.1 + 182662 1.05 0.046332
Target:  5'- uGUAUGUAUAGCUUAGGUGUAACCCUUu -3'
miRNA:   3'- -CAUACAUAUCGAAUCCACAUUGGGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.