miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28252 3' -42.3 NC_005902.1 + 135955 0.88 0.656501
Target:  5'- aAAGGGUUAAUACcuAAGCUAUAUACAa -3'
miRNA:   3'- -UUCCCAAUUAUGacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 5176 0.67 1
Target:  5'- aAAGGGUUAAUAUUuAAGCUuuaaAUAaACAu -3'
miRNA:   3'- -UUCCCAAUUAUGAcUUCGA----UAUaUGU- -5'
28252 3' -42.3 NC_005902.1 + 175756 0.67 1
Target:  5'- aAAGG--UAGUACUccAAGCUAUAUACAa -3'
miRNA:   3'- -UUCCcaAUUAUGAc-UUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 165876 0.66 1
Target:  5'- aAAGGGUgAAUACccuuuaacaccuAAGCUAUAUACGa -3'
miRNA:   3'- -UUCCCAaUUAUGac----------UUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 144988 0.66 1
Target:  5'- ----uUUAAUACUaAAGCUAUAUACAu -3'
miRNA:   3'- uucccAAUUAUGAcUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 87358 0.68 1
Target:  5'- aAAGGcUUAAUACcuAAGCUAUAUAUAu -3'
miRNA:   3'- -UUCCcAAUUAUGacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 127781 0.68 1
Target:  5'- ----uUUAAcACUGAAGCUAUAUACu -3'
miRNA:   3'- uucccAAUUaUGACUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 121612 0.68 1
Target:  5'- gAAGGGUUAAUAUUuAAaUUAUAUACAg -3'
miRNA:   3'- -UUCCCAAUUAUGAcUUcGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 90187 0.82 0.894604
Target:  5'- aGAGGGUUAAUACauAAGCUAUAUAUg -3'
miRNA:   3'- -UUCCCAAUUAUGacUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 15477 0.8 0.953511
Target:  5'- --aGGUUAAUGCUuAAGCUAUAUACAu -3'
miRNA:   3'- uucCCAAUUAUGAcUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 23409 0.78 0.980416
Target:  5'- aAAGGGUUAAcACccAAGCUAUAUACAa -3'
miRNA:   3'- -UUCCCAAUUaUGacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 8692 0.76 0.993533
Target:  5'- aAAGGGUUAAcACUuauGCUAUAUACAa -3'
miRNA:   3'- -UUCCCAAUUaUGAcuuCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 160991 0.76 0.993533
Target:  5'- aAAGGGgUAAUAUcuAAGCUAUAUACAa -3'
miRNA:   3'- -UUCCCaAUUAUGacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 31405 0.74 0.998437
Target:  5'- aAAGGGUauuuacccuuUAAUACcuAAGCUAUAUACAa -3'
miRNA:   3'- -UUCCCA----------AUUAUGacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 182625 0.75 0.998096
Target:  5'- aAAGGGUUAA-ACUuAAGCUAUAUAUg -3'
miRNA:   3'- -UUCCCAAUUaUGAcUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 75891 0.74 0.998437
Target:  5'- aAAGGGUauuuauccuuUAAUACcuAAGCUAUAUACAa -3'
miRNA:   3'- -UUCCCA----------AUUAUGacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 11038 0.72 0.999887
Target:  5'- aAAGGGUUAAcACUuAAGUUAUAUAUg -3'
miRNA:   3'- -UUCCCAAUUaUGAcUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 68957 0.71 0.999966
Target:  5'- --aGGUUAAUACUuAAGCUAUAUAa- -3'
miRNA:   3'- uucCCAAUUAUGAcUUCGAUAUAUgu -5'
28252 3' -42.3 NC_005902.1 + 22613 0.7 0.999982
Target:  5'- aAAGGGUUAAcACcuAAGCUAUAUAUu -3'
miRNA:   3'- -UUCCCAAUUaUGacUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 75956 0.7 0.999982
Target:  5'- uAGGGUUAAcccuuUAUauAAGCUAUAUACGa -3'
miRNA:   3'- uUCCCAAUU-----AUGacUUCGAUAUAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.