miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28252 3' -42.3 NC_005902.1 + 61574 0.69 0.999998
Target:  5'- uGGGGGUUaAGUAUUGAAGCaGUAUucCAc -3'
miRNA:   3'- -UUCCCAA-UUAUGACUUCGaUAUAu-GU- -5'
28252 3' -42.3 NC_005902.1 + 104888 0.73 0.999674
Target:  5'- aAAGGGUUAAUcCUuAAGUUAUAUAUAa -3'
miRNA:   3'- -UUCCCAAUUAuGAcUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 184578 0.66 1
Target:  5'- aAAGGGUacuuaugcuuUAAcACUuAAGCUAUAUACu -3'
miRNA:   3'- -UUCCCA----------AUUaUGAcUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 36945 0.67 1
Target:  5'- cAGGGGUagaguaucucauUAAUACUuuaccuAAGCUAUAUACu -3'
miRNA:   3'- -UUCCCA------------AUUAUGAc-----UUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 40958 0.69 0.999999
Target:  5'- -uGGGUauucacccuuUAAUACcuAAGCUAUAUACAc -3'
miRNA:   3'- uuCCCA----------AUUAUGacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 1198 0.73 0.999674
Target:  5'- aAAGGGUUAAcACcuAAGUUAUAUACAa -3'
miRNA:   3'- -UUCCCAAUUaUGacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 114404 0.67 1
Target:  5'- aAAGGGUUA-------AGCUAUAUACAg -3'
miRNA:   3'- -UUCCCAAUuaugacuUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 165934 0.75 0.997695
Target:  5'- aAAGGGUaaacaccuuuUAAUACUuAAGCUAUAUAUAc -3'
miRNA:   3'- -UUCCCA----------AUUAUGAcUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 110036 0.75 0.996678
Target:  5'- aAAGGGUUAcaACU-AAGCUAUAUACu -3'
miRNA:   3'- -UUCCCAAUuaUGAcUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 161622 0.68 1
Target:  5'- gAAGGGUUAGUguuaACUcauaAGGCUGUAUAUu -3'
miRNA:   3'- -UUCCCAAUUA----UGAc---UUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 26249 0.66 1
Target:  5'- -uGGGUgaauacccuuUAAUACUu-AGCUAUAUACu -3'
miRNA:   3'- uuCCCA----------AUUAUGAcuUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 39466 0.69 0.999997
Target:  5'- aAAGGGUUAaaagauuaGUACUGAA-UUAUAUAUAa -3'
miRNA:   3'- -UUCCCAAU--------UAUGACUUcGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 173886 0.71 0.999954
Target:  5'- uAGaGUUAAUACUuAAGCUAUAUACu -3'
miRNA:   3'- uUCcCAAUUAUGAcUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 134211 0.68 1
Target:  5'- aAAGGGUUAAUACaUGuuGUUGUcaAUACc -3'
miRNA:   3'- -UUCCCAAUUAUG-ACuuCGAUA--UAUGu -5'
28252 3' -42.3 NC_005902.1 + 143632 0.67 1
Target:  5'- cAGGGUUuaaaagAUUGAcaccuaAGCUAUAUACu -3'
miRNA:   3'- uUCCCAAuua---UGACU------UCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 71212 0.66 1
Target:  5'- ----uUUAAUGCUuAAGCUAUAUACAc -3'
miRNA:   3'- uucccAAUUAUGAcUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 121612 0.68 1
Target:  5'- gAAGGGUUAAUAUUuAAaUUAUAUACAg -3'
miRNA:   3'- -UUCCCAAUUAUGAcUUcGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 133619 0.84 0.854374
Target:  5'- aAAGGGUUAAcACUuAAGCUAUAUACAu -3'
miRNA:   3'- -UUCCCAAUUaUGAcUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 15477 0.8 0.953511
Target:  5'- --aGGUUAAUGCUuAAGCUAUAUACAu -3'
miRNA:   3'- uucCCAAUUAUGAcUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 90187 0.82 0.894604
Target:  5'- aGAGGGUUAAUACauAAGCUAUAUAUg -3'
miRNA:   3'- -UUCCCAAUUAUGacUUCGAUAUAUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.