miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28252 3' -42.3 NC_005902.1 + 169547 0.91 0.499472
Target:  5'- cAGGGUUAAUGCUuAAGCUAUAUACAu -3'
miRNA:   3'- uUCCCAAUUAUGAcUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 127533 0.69 0.999998
Target:  5'- aAAGGGUaAAUAUUcAAGCUAgAUACAu -3'
miRNA:   3'- -UUCCCAaUUAUGAcUUCGAUaUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 40958 0.69 0.999999
Target:  5'- -uGGGUauucacccuuUAAUACcuAAGCUAUAUACAc -3'
miRNA:   3'- uuCCCA----------AUUAUGacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 71212 0.66 1
Target:  5'- ----uUUAAUGCUuAAGCUAUAUACAc -3'
miRNA:   3'- uucccAAUUAUGAcUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 28832 0.8 0.953511
Target:  5'- aAAGGGUUAAUACcuAAGCUAUAUAUu -3'
miRNA:   3'- -UUCCCAAUUAUGacUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 166116 0.8 0.957796
Target:  5'- gAAGGGUaaauacccuuUAAUACUuAAGCUAUAUACAu -3'
miRNA:   3'- -UUCCCA----------AUUAUGAcUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 43849 0.76 0.994483
Target:  5'- aAAGGGUUAuUAUUuAAGCUAUAUACu -3'
miRNA:   3'- -UUCCCAAUuAUGAcUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 6249 0.76 0.995317
Target:  5'- aAAGGGUUAAcACcGAAGCcaUAUAUACAc -3'
miRNA:   3'- -UUCCCAAUUaUGaCUUCG--AUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 1198 0.73 0.999674
Target:  5'- aAAGGGUUAAcACcuAAGUUAUAUACAa -3'
miRNA:   3'- -UUCCCAAUUaUGacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 61574 0.69 0.999998
Target:  5'- uGGGGGUUaAGUAUUGAAGCaGUAUucCAc -3'
miRNA:   3'- -UUCCCAA-UUAUGACUUCGaUAUAu-GU- -5'
28252 3' -42.3 NC_005902.1 + 173886 0.71 0.999954
Target:  5'- uAGaGUUAAUACUuAAGCUAUAUACu -3'
miRNA:   3'- uUCcCAAUUAUGAcUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 165934 0.75 0.997695
Target:  5'- aAAGGGUaaacaccuuuUAAUACUuAAGCUAUAUAUAc -3'
miRNA:   3'- -UUCCCA----------AUUAUGAcUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 51419 0.82 0.901818
Target:  5'- aAAGGGUUAAUAUcuAAGCUAUAUACu -3'
miRNA:   3'- -UUCCCAAUUAUGacUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 45317 0.7 0.999994
Target:  5'- -uGGGUUAAaAUUuAAGCUAUAUACu -3'
miRNA:   3'- uuCCCAAUUaUGAcUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 87121 0.82 0.915374
Target:  5'- aAAGGGUUAAUAUUuAAGCUAUAUAUg -3'
miRNA:   3'- -UUCCCAAUUAUGAcUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 110036 0.75 0.996678
Target:  5'- aAAGGGUUAcaACU-AAGCUAUAUACu -3'
miRNA:   3'- -UUCCCAAUuaUGAcUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 39466 0.69 0.999997
Target:  5'- aAAGGGUUAaaagauuaGUACUGAA-UUAUAUAUAa -3'
miRNA:   3'- -UUCCCAAU--------UAUGACUUcGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 46924 0.69 0.999998
Target:  5'- aAAGGauuuaaccuGUUAAUACcuAAGCUAUAUGCAa -3'
miRNA:   3'- -UUCC---------CAAUUAUGacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 27878 0.82 0.92171
Target:  5'- aAAGGGUUAAUGCcuAAGCUAUAUAUg -3'
miRNA:   3'- -UUCCCAAUUAUGacUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 81280 0.77 0.992456
Target:  5'- aAAGGGUUAAcAUcuAAGCUAUAUACAa -3'
miRNA:   3'- -UUCCCAAUUaUGacUUCGAUAUAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.