miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28252 3' -42.3 NC_005902.1 + 11038 0.72 0.999887
Target:  5'- aAAGGGUUAAcACUuAAGUUAUAUAUg -3'
miRNA:   3'- -UUCCCAAUUaUGAcUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 87358 0.68 1
Target:  5'- aAAGGcUUAAUACcuAAGCUAUAUAUAu -3'
miRNA:   3'- -UUCCcAAUUAUGacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 127781 0.68 1
Target:  5'- ----uUUAAcACUGAAGCUAUAUACu -3'
miRNA:   3'- uucccAAUUaUGACUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 121612 0.68 1
Target:  5'- gAAGGGUUAAUAUUuAAaUUAUAUACAg -3'
miRNA:   3'- -UUCCCAAUUAUGAcUUcGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 151187 0.68 0.999999
Target:  5'- aAAGGGUUAAcACcuAAGUUAUAUAUAg -3'
miRNA:   3'- -UUCCCAAUUaUGacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 137895 0.7 0.999991
Target:  5'- aAAGGGUUAAcAUcuAAGCUAUAUAUg -3'
miRNA:   3'- -UUCCCAAUUaUGacUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 75956 0.7 0.999982
Target:  5'- uAGGGUUAAcccuuUAUauAAGCUAUAUACGa -3'
miRNA:   3'- uUCCCAAUU-----AUGacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 22613 0.7 0.999982
Target:  5'- aAAGGGUUAAcACcuAAGCUAUAUAUu -3'
miRNA:   3'- -UUCCCAAUUaUGacUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 68957 0.71 0.999966
Target:  5'- --aGGUUAAUACUuAAGCUAUAUAa- -3'
miRNA:   3'- uucCCAAUUAUGAcUUCGAUAUAUgu -5'
28252 3' -42.3 NC_005902.1 + 11541 0.67 1
Target:  5'- aAAGGGUUA-------AGCUAUAUACAa -3'
miRNA:   3'- -UUCCCAAUuaugacuUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 138824 0.67 1
Target:  5'- aAAGGGUUA-------AGCUAUAUGCAa -3'
miRNA:   3'- -UUCCCAAUuaugacuUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 162803 0.67 1
Target:  5'- aAAGGGUUAAUAUcuAAGCU---UGCAu -3'
miRNA:   3'- -UUCCCAAUUAUGacUUCGAuauAUGU- -5'
28252 3' -42.3 NC_005902.1 + 100658 0.66 1
Target:  5'- aAAGGGUauuuacccuuUAAUAUcuAAGCUAUAUAUg -3'
miRNA:   3'- -UUCCCA----------AUUAUGacUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 144988 0.66 1
Target:  5'- ----uUUAAUACUaAAGCUAUAUACAu -3'
miRNA:   3'- uucccAAUUAUGAcUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 11395 0.66 1
Target:  5'- aAAGGGUauucacucuuUAAcACUuAAGCUAUAUACu -3'
miRNA:   3'- -UUCCCA----------AUUaUGAcUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 165876 0.66 1
Target:  5'- aAAGGGUgAAUACccuuuaacaccuAAGCUAUAUACGa -3'
miRNA:   3'- -UUCCCAaUUAUGac----------UUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 175756 0.67 1
Target:  5'- aAAGG--UAGUACUccAAGCUAUAUACAa -3'
miRNA:   3'- -UUCCcaAUUAUGAc-UUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 5176 0.67 1
Target:  5'- aAAGGGUUAAUAUUuAAGCUuuaaAUAaACAu -3'
miRNA:   3'- -UUCCCAAUUAUGAcUUCGA----UAUaUGU- -5'
28252 3' -42.3 NC_005902.1 + 174998 0.67 1
Target:  5'- ---aGUUAAUACU-AAGCUAUAUACu -3'
miRNA:   3'- uuccCAAUUAUGAcUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 158123 0.67 1
Target:  5'- ----uUUAAUACUuAAGCUAUAUACAa -3'
miRNA:   3'- uucccAAUUAUGAcUUCGAUAUAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.