miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28252 3' -42.3 NC_005902.1 + 46924 0.69 0.999998
Target:  5'- aAAGGauuuaaccuGUUAAUACcuAAGCUAUAUGCAa -3'
miRNA:   3'- -UUCC---------CAAUUAUGacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 51419 0.82 0.901818
Target:  5'- aAAGGGUUAAUAUcuAAGCUAUAUACu -3'
miRNA:   3'- -UUCCCAAUUAUGacUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 58537 0.68 1
Target:  5'- ----uUUAAcACUGAAGCUAUAUACu -3'
miRNA:   3'- uucccAAUUaUGACUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 61574 0.69 0.999998
Target:  5'- uGGGGGUUaAGUAUUGAAGCaGUAUucCAc -3'
miRNA:   3'- -UUCCCAA-UUAUGACUUCGaUAUAu-GU- -5'
28252 3' -42.3 NC_005902.1 + 65689 0.68 1
Target:  5'- aAGGGGUUAAUACUuAAaCUAUAUAa- -3'
miRNA:   3'- -UUCCCAAUUAUGAcUUcGAUAUAUgu -5'
28252 3' -42.3 NC_005902.1 + 67485 0.67 1
Target:  5'- aAAGGGUUA-------AGCUAUGUACAa -3'
miRNA:   3'- -UUCCCAAUuaugacuUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 68957 0.71 0.999966
Target:  5'- --aGGUUAAUACUuAAGCUAUAUAa- -3'
miRNA:   3'- uucCCAAUUAUGAcUUCGAUAUAUgu -5'
28252 3' -42.3 NC_005902.1 + 71212 0.66 1
Target:  5'- ----uUUAAUGCUuAAGCUAUAUACAc -3'
miRNA:   3'- uucccAAUUAUGAcUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 75891 0.74 0.998437
Target:  5'- aAAGGGUauuuauccuuUAAUACcuAAGCUAUAUACAa -3'
miRNA:   3'- -UUCCCA----------AUUAUGacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 75956 0.7 0.999982
Target:  5'- uAGGGUUAAcccuuUAUauAAGCUAUAUACGa -3'
miRNA:   3'- uUCCCAAUU-----AUGacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 76206 0.67 1
Target:  5'- ----uUUAAUACUuAAGCUAUAUACAa -3'
miRNA:   3'- uucccAAUUAUGAcUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 79292 0.67 1
Target:  5'- aAAGGGUU-------GAGCUAUAUACAa -3'
miRNA:   3'- -UUCCCAAuuaugacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 81280 0.77 0.992456
Target:  5'- aAAGGGUUAAcAUcuAAGCUAUAUACAa -3'
miRNA:   3'- -UUCCCAAUUaUGacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 87121 0.82 0.915374
Target:  5'- aAAGGGUUAAUAUUuAAGCUAUAUAUg -3'
miRNA:   3'- -UUCCCAAUUAUGAcUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 87358 0.68 1
Target:  5'- aAAGGcUUAAUACcuAAGCUAUAUAUAu -3'
miRNA:   3'- -UUCCcAAUUAUGacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 90187 0.82 0.894604
Target:  5'- aGAGGGUUAAUACauAAGCUAUAUAUg -3'
miRNA:   3'- -UUCCCAAUUAUGacUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 100658 0.66 1
Target:  5'- aAAGGGUauuuacccuuUAAUAUcuAAGCUAUAUAUg -3'
miRNA:   3'- -UUCCCA----------AUUAUGacUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 104888 0.73 0.999674
Target:  5'- aAAGGGUUAAUcCUuAAGUUAUAUAUAa -3'
miRNA:   3'- -UUCCCAAUUAuGAcUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 110036 0.75 0.996678
Target:  5'- aAAGGGUUAcaACU-AAGCUAUAUACu -3'
miRNA:   3'- -UUCCCAAUuaUGAcUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 114404 0.67 1
Target:  5'- aAAGGGUUA-------AGCUAUAUACAg -3'
miRNA:   3'- -UUCCCAAUuaugacuUCGAUAUAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.