Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28252 | 3' | -42.3 | NC_005902.1 | + | 137895 | 0.7 | 0.999991 |
Target: 5'- aAAGGGUUAAcAUcuAAGCUAUAUAUg -3' miRNA: 3'- -UUCCCAAUUaUGacUUCGAUAUAUGu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 137740 | 0.66 | 1 |
Target: 5'- aAAGGGUauuuacccuuUAAcACUuAAGCUAUAUAUAa -3' miRNA: 3'- -UUCCCA----------AUUaUGAcUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 135955 | 0.88 | 0.656501 |
Target: 5'- aAAGGGUUAAUACcuAAGCUAUAUACAa -3' miRNA: 3'- -UUCCCAAUUAUGacUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 134211 | 0.68 | 1 |
Target: 5'- aAAGGGUUAAUACaUGuuGUUGUcaAUACc -3' miRNA: 3'- -UUCCCAAUUAUG-ACuuCGAUA--UAUGu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 133619 | 0.84 | 0.854374 |
Target: 5'- aAAGGGUUAAcACUuAAGCUAUAUACAu -3' miRNA: 3'- -UUCCCAAUUaUGAcUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 127781 | 0.68 | 1 |
Target: 5'- ----uUUAAcACUGAAGCUAUAUACu -3' miRNA: 3'- uucccAAUUaUGACUUCGAUAUAUGu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 127533 | 0.69 | 0.999998 |
Target: 5'- aAAGGGUaAAUAUUcAAGCUAgAUACAu -3' miRNA: 3'- -UUCCCAaUUAUGAcUUCGAUaUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 121612 | 0.68 | 1 |
Target: 5'- gAAGGGUUAAUAUUuAAaUUAUAUACAg -3' miRNA: 3'- -UUCCCAAUUAUGAcUUcGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 114404 | 0.67 | 1 |
Target: 5'- aAAGGGUUA-------AGCUAUAUACAg -3' miRNA: 3'- -UUCCCAAUuaugacuUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 110036 | 0.75 | 0.996678 |
Target: 5'- aAAGGGUUAcaACU-AAGCUAUAUACu -3' miRNA: 3'- -UUCCCAAUuaUGAcUUCGAUAUAUGu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 104888 | 0.73 | 0.999674 |
Target: 5'- aAAGGGUUAAUcCUuAAGUUAUAUAUAa -3' miRNA: 3'- -UUCCCAAUUAuGAcUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 100658 | 0.66 | 1 |
Target: 5'- aAAGGGUauuuacccuuUAAUAUcuAAGCUAUAUAUg -3' miRNA: 3'- -UUCCCA----------AUUAUGacUUCGAUAUAUGu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 90187 | 0.82 | 0.894604 |
Target: 5'- aGAGGGUUAAUACauAAGCUAUAUAUg -3' miRNA: 3'- -UUCCCAAUUAUGacUUCGAUAUAUGu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 87358 | 0.68 | 1 |
Target: 5'- aAAGGcUUAAUACcuAAGCUAUAUAUAu -3' miRNA: 3'- -UUCCcAAUUAUGacUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 87121 | 0.82 | 0.915374 |
Target: 5'- aAAGGGUUAAUAUUuAAGCUAUAUAUg -3' miRNA: 3'- -UUCCCAAUUAUGAcUUCGAUAUAUGu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 81280 | 0.77 | 0.992456 |
Target: 5'- aAAGGGUUAAcAUcuAAGCUAUAUACAa -3' miRNA: 3'- -UUCCCAAUUaUGacUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 79292 | 0.67 | 1 |
Target: 5'- aAAGGGUU-------GAGCUAUAUACAa -3' miRNA: 3'- -UUCCCAAuuaugacUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 76206 | 0.67 | 1 |
Target: 5'- ----uUUAAUACUuAAGCUAUAUACAa -3' miRNA: 3'- uucccAAUUAUGAcUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 75956 | 0.7 | 0.999982 |
Target: 5'- uAGGGUUAAcccuuUAUauAAGCUAUAUACGa -3' miRNA: 3'- uUCCCAAUU-----AUGacUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 75891 | 0.74 | 0.998437 |
Target: 5'- aAAGGGUauuuauccuuUAAUACcuAAGCUAUAUACAa -3' miRNA: 3'- -UUCCCA----------AUUAUGacUUCGAUAUAUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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