miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28252 3' -42.3 NC_005902.1 + 184578 0.66 1
Target:  5'- aAAGGGUacuuaugcuuUAAcACUuAAGCUAUAUACu -3'
miRNA:   3'- -UUCCCA----------AUUaUGAcUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 182625 0.75 0.998096
Target:  5'- aAAGGGUUAA-ACUuAAGCUAUAUAUg -3'
miRNA:   3'- -UUCCCAAUUaUGAcUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 179753 1.08 0.071452
Target:  5'- aAAGGGUUAAUACUGAAGCUAUAUACAa -3'
miRNA:   3'- -UUCCCAAUUAUGACUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 175756 0.67 1
Target:  5'- aAAGG--UAGUACUccAAGCUAUAUACAa -3'
miRNA:   3'- -UUCCcaAUUAUGAc-UUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 174998 0.67 1
Target:  5'- ---aGUUAAUACU-AAGCUAUAUACu -3'
miRNA:   3'- uuccCAAUUAUGAcUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 173886 0.71 0.999954
Target:  5'- uAGaGUUAAUACUuAAGCUAUAUACu -3'
miRNA:   3'- uUCcCAAUUAUGAcUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 169547 0.91 0.499472
Target:  5'- cAGGGUUAAUGCUuAAGCUAUAUACAu -3'
miRNA:   3'- uUCCCAAUUAUGAcUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 166116 0.8 0.957796
Target:  5'- gAAGGGUaaauacccuuUAAUACUuAAGCUAUAUACAu -3'
miRNA:   3'- -UUCCCA----------AUUAUGAcUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 165934 0.75 0.997695
Target:  5'- aAAGGGUaaacaccuuuUAAUACUuAAGCUAUAUAUAc -3'
miRNA:   3'- -UUCCCA----------AUUAUGAcUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 165876 0.66 1
Target:  5'- aAAGGGUgAAUACccuuuaacaccuAAGCUAUAUACGa -3'
miRNA:   3'- -UUCCCAaUUAUGac----------UUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 162803 0.67 1
Target:  5'- aAAGGGUUAAUAUcuAAGCU---UGCAu -3'
miRNA:   3'- -UUCCCAAUUAUGacUUCGAuauAUGU- -5'
28252 3' -42.3 NC_005902.1 + 162162 0.66 1
Target:  5'- uAGGGUggAGUAUUGcuuuuAAGUUAUAUACu -3'
miRNA:   3'- uUCCCAa-UUAUGAC-----UUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 161622 0.68 1
Target:  5'- gAAGGGUUAGUguuaACUcauaAGGCUGUAUAUu -3'
miRNA:   3'- -UUCCCAAUUA----UGAc---UUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 160991 0.76 0.993533
Target:  5'- aAAGGGgUAAUAUcuAAGCUAUAUACAa -3'
miRNA:   3'- -UUCCCaAUUAUGacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 158123 0.67 1
Target:  5'- ----uUUAAUACUuAAGCUAUAUACAa -3'
miRNA:   3'- uucccAAUUAUGAcUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 151187 0.68 0.999999
Target:  5'- aAAGGGUUAAcACcuAAGUUAUAUAUAg -3'
miRNA:   3'- -UUCCCAAUUaUGacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 144988 0.66 1
Target:  5'- ----uUUAAUACUaAAGCUAUAUACAu -3'
miRNA:   3'- uucccAAUUAUGAcUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 143632 0.67 1
Target:  5'- cAGGGUUuaaaagAUUGAcaccuaAGCUAUAUACu -3'
miRNA:   3'- uUCCCAAuua---UGACU------UCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 139692 0.66 1
Target:  5'- aAAGaGUUAAUACcuAGGCUAUAUAUAa -3'
miRNA:   3'- -UUCcCAAUUAUGacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 138824 0.67 1
Target:  5'- aAAGGGUUA-------AGCUAUAUGCAa -3'
miRNA:   3'- -UUCCCAAUuaugacuUCGAUAUAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.