Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 28252 | 3' | -42.3 | NC_005902.1 | + | 27878 | 0.82 | 0.92171 |
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Target: 5'- aAAGGGUUAAUGCcuAAGCUAUAUAUg -3' miRNA: 3'- -UUCCCAAUUAUGacUUCGAUAUAUGu -5' |
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| 28252 | 3' | -42.3 | NC_005902.1 | + | 87121 | 0.82 | 0.915374 |
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Target: 5'- aAAGGGUUAAUAUUuAAGCUAUAUAUg -3' miRNA: 3'- -UUCCCAAUUAUGAcUUCGAUAUAUGu -5' |
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| 28252 | 3' | -42.3 | NC_005902.1 | + | 51419 | 0.82 | 0.901818 |
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Target: 5'- aAAGGGUUAAUAUcuAAGCUAUAUACu -3' miRNA: 3'- -UUCCCAAUUAUGacUUCGAUAUAUGu -5' |
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| 28252 | 3' | -42.3 | NC_005902.1 | + | 90187 | 0.82 | 0.894604 |
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Target: 5'- aGAGGGUUAAUACauAAGCUAUAUAUg -3' miRNA: 3'- -UUCCCAAUUAUGacUUCGAUAUAUGu -5' |
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| 28252 | 3' | -42.3 | NC_005902.1 | + | 133619 | 0.84 | 0.854374 |
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Target: 5'- aAAGGGUUAAcACUuAAGCUAUAUACAu -3' miRNA: 3'- -UUCCCAAUUaUGAcUUCGAUAUAUGU- -5' |
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| 28252 | 3' | -42.3 | NC_005902.1 | + | 135955 | 0.88 | 0.656501 |
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Target: 5'- aAAGGGUUAAUACcuAAGCUAUAUACAa -3' miRNA: 3'- -UUCCCAAUUAUGacUUCGAUAUAUGU- -5' |
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| 28252 | 3' | -42.3 | NC_005902.1 | + | 169547 | 0.91 | 0.499472 |
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Target: 5'- cAGGGUUAAUGCUuAAGCUAUAUACAu -3' miRNA: 3'- uUCCCAAUUAUGAcUUCGAUAUAUGU- -5' |
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| 28252 | 3' | -42.3 | NC_005902.1 | + | 179753 | 1.08 | 0.071452 |
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Target: 5'- aAAGGGUUAAUACUGAAGCUAUAUACAa -3' miRNA: 3'- -UUCCCAAUUAUGACUUCGAUAUAUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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