Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28252 | 3' | -42.3 | NC_005902.1 | + | 75956 | 0.7 | 0.999982 |
Target: 5'- uAGGGUUAAcccuuUAUauAAGCUAUAUACGa -3' miRNA: 3'- uUCCCAAUU-----AUGacUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 68957 | 0.71 | 0.999966 |
Target: 5'- --aGGUUAAUACUuAAGCUAUAUAa- -3' miRNA: 3'- uucCCAAUUAUGAcUUCGAUAUAUgu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 173886 | 0.71 | 0.999954 |
Target: 5'- uAGaGUUAAUACUuAAGCUAUAUACu -3' miRNA: 3'- uUCcCAAUUAUGAcUUCGAUAUAUGu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 11038 | 0.72 | 0.999887 |
Target: 5'- aAAGGGUUAAcACUuAAGUUAUAUAUg -3' miRNA: 3'- -UUCCCAAUUaUGAcUUCGAUAUAUGu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 104888 | 0.73 | 0.999674 |
Target: 5'- aAAGGGUUAAUcCUuAAGUUAUAUAUAa -3' miRNA: 3'- -UUCCCAAUUAuGAcUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 1198 | 0.73 | 0.999674 |
Target: 5'- aAAGGGUUAAcACcuAAGUUAUAUACAa -3' miRNA: 3'- -UUCCCAAUUaUGacUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 31405 | 0.74 | 0.998437 |
Target: 5'- aAAGGGUauuuacccuuUAAUACcuAAGCUAUAUACAa -3' miRNA: 3'- -UUCCCA----------AUUAUGacUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 75891 | 0.74 | 0.998437 |
Target: 5'- aAAGGGUauuuauccuuUAAUACcuAAGCUAUAUACAa -3' miRNA: 3'- -UUCCCA----------AUUAUGacUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 182625 | 0.75 | 0.998096 |
Target: 5'- aAAGGGUUAA-ACUuAAGCUAUAUAUg -3' miRNA: 3'- -UUCCCAAUUaUGAcUUCGAUAUAUGu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 165934 | 0.75 | 0.997695 |
Target: 5'- aAAGGGUaaacaccuuuUAAUACUuAAGCUAUAUAUAc -3' miRNA: 3'- -UUCCCA----------AUUAUGAcUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 110036 | 0.75 | 0.996678 |
Target: 5'- aAAGGGUUAcaACU-AAGCUAUAUACu -3' miRNA: 3'- -UUCCCAAUuaUGAcUUCGAUAUAUGu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 6249 | 0.76 | 0.995317 |
Target: 5'- aAAGGGUUAAcACcGAAGCcaUAUAUACAc -3' miRNA: 3'- -UUCCCAAUUaUGaCUUCG--AUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 43849 | 0.76 | 0.994483 |
Target: 5'- aAAGGGUUAuUAUUuAAGCUAUAUACu -3' miRNA: 3'- -UUCCCAAUuAUGAcUUCGAUAUAUGu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 8692 | 0.76 | 0.993533 |
Target: 5'- aAAGGGUUAAcACUuauGCUAUAUACAa -3' miRNA: 3'- -UUCCCAAUUaUGAcuuCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 160991 | 0.76 | 0.993533 |
Target: 5'- aAAGGGgUAAUAUcuAAGCUAUAUACAa -3' miRNA: 3'- -UUCCCaAUUAUGacUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 81280 | 0.77 | 0.992456 |
Target: 5'- aAAGGGUUAAcAUcuAAGCUAUAUACAa -3' miRNA: 3'- -UUCCCAAUUaUGacUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 23409 | 0.78 | 0.980416 |
Target: 5'- aAAGGGUUAAcACccAAGCUAUAUACAa -3' miRNA: 3'- -UUCCCAAUUaUGacUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 166116 | 0.8 | 0.957796 |
Target: 5'- gAAGGGUaaauacccuuUAAUACUuAAGCUAUAUACAu -3' miRNA: 3'- -UUCCCA----------AUUAUGAcUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 28832 | 0.8 | 0.953511 |
Target: 5'- aAAGGGUUAAUACcuAAGCUAUAUAUu -3' miRNA: 3'- -UUCCCAAUUAUGacUUCGAUAUAUGu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 15477 | 0.8 | 0.953511 |
Target: 5'- --aGGUUAAUGCUuAAGCUAUAUACAu -3' miRNA: 3'- uucCCAAUUAUGAcUUCGAUAUAUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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