miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28252 5' -44.4 NC_005902.1 + 110079 0.66 1
Target:  5'- cGUAUAUA--GCUUauauaaaGG-GUUAACCCu -3'
miRNA:   3'- aCAUAUAUacCGAAg------CCaCAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 113819 0.68 0.999993
Target:  5'- aUGUAUAUAUaGUUUaGGUGUUAACg- -3'
miRNA:   3'- -ACAUAUAUAcCGAAgCCACAAUUGgg -5'
28252 5' -44.4 NC_005902.1 + 131701 0.73 0.998198
Target:  5'- -aUAUAUAUaGCUUaGGUGUUAAUCCu -3'
miRNA:   3'- acAUAUAUAcCGAAgCCACAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 138802 0.67 0.999999
Target:  5'- gUGUGUAUAUaGCUUaGGUGUUAAa-- -3'
miRNA:   3'- -ACAUAUAUAcCGAAgCCACAAUUggg -5'
28252 5' -44.4 NC_005902.1 + 140962 0.67 0.999999
Target:  5'- aGUAUAUA--GCUUaGGUGUUAaaagguaaacACCCu -3'
miRNA:   3'- aCAUAUAUacCGAAgCCACAAU----------UGGG- -5'
28252 5' -44.4 NC_005902.1 + 142024 0.67 0.999999
Target:  5'- cGUGUAUAUaGCUUaGGUGUUAaaagguauuuuuAUCCu -3'
miRNA:   3'- aCAUAUAUAcCGAAgCCACAAU------------UGGG- -5'
28252 5' -44.4 NC_005902.1 + 153066 0.73 0.996906
Target:  5'- aGUAUAUA--GUUUaGGUGUUAACCCc -3'
miRNA:   3'- aCAUAUAUacCGAAgCCACAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 157064 0.72 0.999002
Target:  5'- uUGUGUAUA--GCUUaGGUGUUAACaCCu -3'
miRNA:   3'- -ACAUAUAUacCGAAgCCACAAUUG-GG- -5'
28252 5' -44.4 NC_005902.1 + 162431 0.67 0.999999
Target:  5'- uUGUGUGUAUaGCUUaGGUGUUAAa-- -3'
miRNA:   3'- -ACAUAUAUAcCGAAgCCACAAUUggg -5'
28252 5' -44.4 NC_005902.1 + 162628 0.67 0.999998
Target:  5'- aGUAUAUA--GCUUgaauGUGUUAGCCCu -3'
miRNA:   3'- aCAUAUAUacCGAAgc--CACAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 162630 0.85 0.69591
Target:  5'- uUGUAUAUA--GCUUgGGUGUUAACCCu -3'
miRNA:   3'- -ACAUAUAUacCGAAgCCACAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 163423 0.77 0.969231
Target:  5'- aGUAaaUAUAUaGCUUaGGUGUUAACCCu -3'
miRNA:   3'- aCAU--AUAUAcCGAAgCCACAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 165974 0.69 0.999962
Target:  5'- uUGUuuGUAUAUGGCUUauGUGUUAAa-- -3'
miRNA:   3'- -ACA--UAUAUACCGAAgcCACAAUUggg -5'
28252 5' -44.4 NC_005902.1 + 177347 0.66 1
Target:  5'- uUGUAUAUA--GCaUaaGUGUUAACCCu -3'
miRNA:   3'- -ACAUAUAUacCGaAgcCACAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 179787 1.15 0.023696
Target:  5'- gUGUAUAUAUGGCUUCGGUGUUAACCCu -3'
miRNA:   3'- -ACAUAUAUACCGAAGCCACAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 182661 0.76 0.9802
Target:  5'- uUGUAUGUAUaGCUUaGGUG-UAACCCu -3'
miRNA:   3'- -ACAUAUAUAcCGAAgCCACaAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 182963 0.68 0.999995
Target:  5'- gUGUAUAUAUaGCUUaGGUGUUAAaUCg -3'
miRNA:   3'- -ACAUAUAUAcCGAAgCCACAAUUgGG- -5'
28252 5' -44.4 NC_005902.1 + 184840 0.72 0.998512
Target:  5'- uUGUAUAUAa--CUUaGGUGUUAACCCu -3'
miRNA:   3'- -ACAUAUAUaccGAAgCCACAAUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.