miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28253 3' -40.8 NC_005902.1 + 177716 1.05 0.150243
Target:  5'- uAAGAGAUUAAUUCCUAAAGCUUCAUUg -3'
miRNA:   3'- -UUCUCUAAUUAAGGAUUUCGAAGUAA- -5'
28253 3' -40.8 NC_005902.1 + 50411 0.77 0.995979
Target:  5'- aAAG-GGUUAAUUCCUAAGGCaUCAUc -3'
miRNA:   3'- -UUCuCUAAUUAAGGAUUUCGaAGUAa -5'
28253 3' -40.8 NC_005902.1 + 143764 0.76 0.998443
Target:  5'- uAAGGGGUUAAgUCCUAAGGCUUa--- -3'
miRNA:   3'- -UUCUCUAAUUaAGGAUUUCGAAguaa -5'
28253 3' -40.8 NC_005902.1 + 92634 0.74 0.999816
Target:  5'- uGAGGGAUUAAaUCCUAAAGUUuauacUCGUUc -3'
miRNA:   3'- -UUCUCUAAUUaAGGAUUUCGA-----AGUAA- -5'
28253 3' -40.8 NC_005902.1 + 69116 0.74 0.999816
Target:  5'- aAAG-GGUUAAUUCCUAAGGCauauaUUCAUUu -3'
miRNA:   3'- -UUCuCUAAUUAAGGAUUUCG-----AAGUAA- -5'
28253 3' -40.8 NC_005902.1 + 18685 0.73 0.999958
Target:  5'- aAAGGGuauuuacccuUUAAUUCCUAAAGCaUCAUUg -3'
miRNA:   3'- -UUCUCu---------AAUUAAGGAUUUCGaAGUAA- -5'
28253 3' -40.8 NC_005902.1 + 165833 0.72 0.999993
Target:  5'- uAGGAG-UUAAcUCCUAAGGCaUCAUUg -3'
miRNA:   3'- -UUCUCuAAUUaAGGAUUUCGaAGUAA- -5'
28253 3' -40.8 NC_005902.1 + 69178 0.72 0.999989
Target:  5'- aAAG-GGUUAAUUCCUAAAGCaUUAa- -3'
miRNA:   3'- -UUCuCUAAUUAAGGAUUUCGaAGUaa -5'
28253 3' -40.8 NC_005902.1 + 20217 0.72 0.999993
Target:  5'- uAGGAG-UUAAcUCCUAAGGCaUCAUUg -3'
miRNA:   3'- -UUCUCuAAUUaAGGAUUUCGaAGUAA- -5'
28253 3' -40.8 NC_005902.1 + 122648 0.72 0.999993
Target:  5'- aAAG-GAUUAAUUCUUAAGGUaUCAUUa -3'
miRNA:   3'- -UUCuCUAAUUAAGGAUUUCGaAGUAA- -5'
28253 3' -40.8 NC_005902.1 + 84996 0.71 0.999997
Target:  5'- --aAGGUUAAUUCCUAAAGCaUUGUg -3'
miRNA:   3'- uucUCUAAUUAAGGAUUUCGaAGUAa -5'
28253 3' -40.8 NC_005902.1 + 28874 0.7 1
Target:  5'- uAGGuAUUAAUUCCUAGGGCaUCAg- -3'
miRNA:   3'- uUCUcUAAUUAAGGAUUUCGaAGUaa -5'
28253 3' -40.8 NC_005902.1 + 1312 0.7 1
Target:  5'- --aGGAUUAAUUCCUAAGGUgUUGUUg -3'
miRNA:   3'- uucUCUAAUUAAGGAUUUCGaAGUAA- -5'
28253 3' -40.8 NC_005902.1 + 91236 0.7 1
Target:  5'- aAAGAG-UUAAUUCC-AAAGCaUCAUUa -3'
miRNA:   3'- -UUCUCuAAUUAAGGaUUUCGaAGUAA- -5'
28253 3' -40.8 NC_005902.1 + 170637 0.7 0.999999
Target:  5'- aAAGAG-UUAAacCCUAAGGCUUCAc- -3'
miRNA:   3'- -UUCUCuAAUUaaGGAUUUCGAAGUaa -5'
28253 3' -40.8 NC_005902.1 + 37822 0.7 1
Target:  5'- --aAGAUUAAUUCCUAAGGUaUUGUUg -3'
miRNA:   3'- uucUCUAAUUAAGGAUUUCGaAGUAA- -5'
28253 3' -40.8 NC_005902.1 + 63159 0.69 1
Target:  5'- aAAGAuGAacccuUUAAUUCCUAAGGCaUCAUc -3'
miRNA:   3'- -UUCU-CU-----AAUUAAGGAUUUCGaAGUAa -5'
28253 3' -40.8 NC_005902.1 + 26321 0.69 1
Target:  5'- --aAGAUUAAcUCCUAAGGCaUCAUc -3'
miRNA:   3'- uucUCUAAUUaAGGAUUUCGaAGUAa -5'
28253 3' -40.8 NC_005902.1 + 34877 0.69 1
Target:  5'- -----uUUAAUUCCUAAGGCUUUAa- -3'
miRNA:   3'- uucucuAAUUAAGGAUUUCGAAGUaa -5'
28253 3' -40.8 NC_005902.1 + 41913 0.68 1
Target:  5'- --aAGAUUAAcUCCUAAGGCaUCAa- -3'
miRNA:   3'- uucUCUAAUUaAGGAUUUCGaAGUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.