miRNA display CGI


Results 21 - 24 of 24 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28253 3' -40.8 NC_005902.1 + 48077 0.68 1
Target:  5'- -----uUUAAUUCCUAAGGCaUCAUUa -3'
miRNA:   3'- uucucuAAUUAAGGAUUUCGaAGUAA- -5'
28253 3' -40.8 NC_005902.1 + 41913 0.68 1
Target:  5'- --aAGAUUAAcUCCUAAGGCaUCAa- -3'
miRNA:   3'- uucUCUAAUUaAGGAUUUCGaAGUaa -5'
28253 3' -40.8 NC_005902.1 + 100381 0.66 1
Target:  5'- aAAG-GGUUAAaUCCUAAGGCUUa--- -3'
miRNA:   3'- -UUCuCUAAUUaAGGAUUUCGAAguaa -5'
28253 3' -40.8 NC_005902.1 + 67972 0.66 1
Target:  5'- uGGGGuuaauccuUUAAUUCCUAAAGUaUCAUc -3'
miRNA:   3'- uUCUCu-------AAUUAAGGAUUUCGaAGUAa -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.