Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28253 | 5' | -48.9 | NC_005902.1 | + | 24091 | 0.66 | 0.99937 |
Target: 5'- aUUAACGaUGCCUUAGGAGUUAAaguguuuacCCCUa -3' miRNA: 3'- -AGUUGUcGUGGAGUUCUCAAUU---------GGGA- -5' |
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28253 | 5' | -48.9 | NC_005902.1 | + | 1595 | 0.66 | 0.999222 |
Target: 5'- aUUAACAaCACCUUAAGAGUUAAa--- -3' miRNA: 3'- -AGUUGUcGUGGAGUUCUCAAUUggga -5' |
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28253 | 5' | -48.9 | NC_005902.1 | + | 26474 | 0.66 | 0.999222 |
Target: 5'- aCAACAGCAU----GGAGUUAAUCUUa -3' miRNA: 3'- aGUUGUCGUGgaguUCUCAAUUGGGA- -5' |
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28253 | 5' | -48.9 | NC_005902.1 | + | 172702 | 0.66 | 0.999044 |
Target: 5'- gUCAAUgaUGCCUUAGGGGUUAACUUUa -3' miRNA: 3'- -AGUUGucGUGGAGUUCUCAAUUGGGA- -5' |
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28253 | 5' | -48.9 | NC_005902.1 | + | 161925 | 0.67 | 0.998584 |
Target: 5'- aUCAAUAaCACCUUAGGGGUaaacacuuUAACuCCUa -3' miRNA: 3'- -AGUUGUcGUGGAGUUCUCA--------AUUG-GGA- -5' |
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28253 | 5' | -48.9 | NC_005902.1 | + | 52303 | 0.67 | 0.998584 |
Target: 5'- aCAAUgcuuAGCAUCaUUAaugaGGAGUUAACCCUu -3' miRNA: 3'- aGUUG----UCGUGG-AGU----UCUCAAUUGGGA- -5' |
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28253 | 5' | -48.9 | NC_005902.1 | + | 67084 | 0.67 | 0.998556 |
Target: 5'- aUCAACAaCACCUUAggauuaaAGAGUUAAUgCUu -3' miRNA: 3'- -AGUUGUcGUGGAGU-------UCUCAAUUGgGA- -5' |
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28253 | 5' | -48.9 | NC_005902.1 | + | 81200 | 0.68 | 0.995249 |
Target: 5'- aUAACAaCACCUUAAGAGUUAAUg-- -3' miRNA: 3'- aGUUGUcGUGGAGUUCUCAAUUGgga -5' |
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28253 | 5' | -48.9 | NC_005902.1 | + | 162486 | 0.68 | 0.994788 |
Target: 5'- gUUGAUGGCAUUUUAcaucaucaacaauguAGAGUUAACCCUu -3' miRNA: 3'- -AGUUGUCGUGGAGU---------------UCUCAAUUGGGA- -5' |
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28253 | 5' | -48.9 | NC_005902.1 | + | 20524 | 0.68 | 0.994461 |
Target: 5'- aCAACAGCAUCaaauaCAGuAGUUAAUCCUg -3' miRNA: 3'- aGUUGUCGUGGa----GUUcUCAAUUGGGA- -5' |
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28253 | 5' | -48.9 | NC_005902.1 | + | 144114 | 0.68 | 0.993569 |
Target: 5'- aCAACAcuuuGUaucauugauGCCUUAGGAGUUAACUCUu -3' miRNA: 3'- aGUUGU----CG---------UGGAGUUCUCAAUUGGGA- -5' |
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28253 | 5' | -48.9 | NC_005902.1 | + | 18836 | 0.71 | 0.961609 |
Target: 5'- -aAACAaUGCCUUAGGAGUUAACCUUu -3' miRNA: 3'- agUUGUcGUGGAGUUCUCAAUUGGGA- -5' |
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28253 | 5' | -48.9 | NC_005902.1 | + | 95433 | 0.71 | 0.961609 |
Target: 5'- aCAAuCAGCAagCUUAGGuGUUAACCCUu -3' miRNA: 3'- aGUU-GUCGUg-GAGUUCuCAAUUGGGA- -5' |
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28253 | 5' | -48.9 | NC_005902.1 | + | 20204 | 0.72 | 0.957842 |
Target: 5'- aUCAAUgaUGCCUUAGGAGUUAACuCCUa -3' miRNA: 3'- -AGUUGucGUGGAGUUCUCAAUUG-GGA- -5' |
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28253 | 5' | -48.9 | NC_005902.1 | + | 6157 | 0.72 | 0.957842 |
Target: 5'- aUCAACAGCAU----AGAGUUAACUCUu -3' miRNA: 3'- -AGUUGUCGUGgaguUCUCAAUUGGGA- -5' |
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28253 | 5' | -48.9 | NC_005902.1 | + | 100759 | 0.72 | 0.957842 |
Target: 5'- aCAugAGCacauauaaGCCUUAAGAGUUAaagcaauauuuACCCUg -3' miRNA: 3'- aGUugUCG--------UGGAGUUCUCAAU-----------UGGGA- -5' |
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28253 | 5' | -48.9 | NC_005902.1 | + | 165820 | 0.72 | 0.957842 |
Target: 5'- aUCAAUgaUGCCUUAGGAGUUAACuCCUa -3' miRNA: 3'- -AGUUGucGUGGAGUUCUCAAUUG-GGA- -5' |
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28253 | 5' | -48.9 | NC_005902.1 | + | 134251 | 0.74 | 0.906149 |
Target: 5'- aUCAACAaUGCUUUAAGAGUUAACUCUu -3' miRNA: 3'- -AGUUGUcGUGGAGUUCUCAAUUGGGA- -5' |
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28253 | 5' | -48.9 | NC_005902.1 | + | 184727 | 0.74 | 0.899552 |
Target: 5'- aUCAACAaCACCUUAGGAaUUAAUCCUa -3' miRNA: 3'- -AGUUGUcGUGGAGUUCUcAAUUGGGA- -5' |
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28253 | 5' | -48.9 | NC_005902.1 | + | 4876 | 0.75 | 0.846511 |
Target: 5'- aUCAGUGGCACgUUuGGAGUUAACCCUu -3' miRNA: 3'- -AGUUGUCGUGgAGuUCUCAAUUGGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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