miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28253 5' -48.9 NC_005902.1 + 24091 0.66 0.99937
Target:  5'- aUUAACGaUGCCUUAGGAGUUAAaguguuuacCCCUa -3'
miRNA:   3'- -AGUUGUcGUGGAGUUCUCAAUU---------GGGA- -5'
28253 5' -48.9 NC_005902.1 + 1595 0.66 0.999222
Target:  5'- aUUAACAaCACCUUAAGAGUUAAa--- -3'
miRNA:   3'- -AGUUGUcGUGGAGUUCUCAAUUggga -5'
28253 5' -48.9 NC_005902.1 + 26474 0.66 0.999222
Target:  5'- aCAACAGCAU----GGAGUUAAUCUUa -3'
miRNA:   3'- aGUUGUCGUGgaguUCUCAAUUGGGA- -5'
28253 5' -48.9 NC_005902.1 + 172702 0.66 0.999044
Target:  5'- gUCAAUgaUGCCUUAGGGGUUAACUUUa -3'
miRNA:   3'- -AGUUGucGUGGAGUUCUCAAUUGGGA- -5'
28253 5' -48.9 NC_005902.1 + 161925 0.67 0.998584
Target:  5'- aUCAAUAaCACCUUAGGGGUaaacacuuUAACuCCUa -3'
miRNA:   3'- -AGUUGUcGUGGAGUUCUCA--------AUUG-GGA- -5'
28253 5' -48.9 NC_005902.1 + 52303 0.67 0.998584
Target:  5'- aCAAUgcuuAGCAUCaUUAaugaGGAGUUAACCCUu -3'
miRNA:   3'- aGUUG----UCGUGG-AGU----UCUCAAUUGGGA- -5'
28253 5' -48.9 NC_005902.1 + 67084 0.67 0.998556
Target:  5'- aUCAACAaCACCUUAggauuaaAGAGUUAAUgCUu -3'
miRNA:   3'- -AGUUGUcGUGGAGU-------UCUCAAUUGgGA- -5'
28253 5' -48.9 NC_005902.1 + 81200 0.68 0.995249
Target:  5'- aUAACAaCACCUUAAGAGUUAAUg-- -3'
miRNA:   3'- aGUUGUcGUGGAGUUCUCAAUUGgga -5'
28253 5' -48.9 NC_005902.1 + 162486 0.68 0.994788
Target:  5'- gUUGAUGGCAUUUUAcaucaucaacaauguAGAGUUAACCCUu -3'
miRNA:   3'- -AGUUGUCGUGGAGU---------------UCUCAAUUGGGA- -5'
28253 5' -48.9 NC_005902.1 + 20524 0.68 0.994461
Target:  5'- aCAACAGCAUCaaauaCAGuAGUUAAUCCUg -3'
miRNA:   3'- aGUUGUCGUGGa----GUUcUCAAUUGGGA- -5'
28253 5' -48.9 NC_005902.1 + 144114 0.68 0.993569
Target:  5'- aCAACAcuuuGUaucauugauGCCUUAGGAGUUAACUCUu -3'
miRNA:   3'- aGUUGU----CG---------UGGAGUUCUCAAUUGGGA- -5'
28253 5' -48.9 NC_005902.1 + 18836 0.71 0.961609
Target:  5'- -aAACAaUGCCUUAGGAGUUAACCUUu -3'
miRNA:   3'- agUUGUcGUGGAGUUCUCAAUUGGGA- -5'
28253 5' -48.9 NC_005902.1 + 95433 0.71 0.961609
Target:  5'- aCAAuCAGCAagCUUAGGuGUUAACCCUu -3'
miRNA:   3'- aGUU-GUCGUg-GAGUUCuCAAUUGGGA- -5'
28253 5' -48.9 NC_005902.1 + 6157 0.72 0.957842
Target:  5'- aUCAACAGCAU----AGAGUUAACUCUu -3'
miRNA:   3'- -AGUUGUCGUGgaguUCUCAAUUGGGA- -5'
28253 5' -48.9 NC_005902.1 + 20204 0.72 0.957842
Target:  5'- aUCAAUgaUGCCUUAGGAGUUAACuCCUa -3'
miRNA:   3'- -AGUUGucGUGGAGUUCUCAAUUG-GGA- -5'
28253 5' -48.9 NC_005902.1 + 100759 0.72 0.957842
Target:  5'- aCAugAGCacauauaaGCCUUAAGAGUUAaagcaauauuuACCCUg -3'
miRNA:   3'- aGUugUCG--------UGGAGUUCUCAAU-----------UGGGA- -5'
28253 5' -48.9 NC_005902.1 + 165820 0.72 0.957842
Target:  5'- aUCAAUgaUGCCUUAGGAGUUAACuCCUa -3'
miRNA:   3'- -AGUUGucGUGGAGUUCUCAAUUG-GGA- -5'
28253 5' -48.9 NC_005902.1 + 134251 0.74 0.906149
Target:  5'- aUCAACAaUGCUUUAAGAGUUAACUCUu -3'
miRNA:   3'- -AGUUGUcGUGGAGUUCUCAAUUGGGA- -5'
28253 5' -48.9 NC_005902.1 + 184727 0.74 0.899552
Target:  5'- aUCAACAaCACCUUAGGAaUUAAUCCUa -3'
miRNA:   3'- -AGUUGUcGUGGAGUUCUcAAUUGGGA- -5'
28253 5' -48.9 NC_005902.1 + 4876 0.75 0.846511
Target:  5'- aUCAGUGGCACgUUuGGAGUUAACCCUu -3'
miRNA:   3'- -AGUUGUCGUGgAGuUCUCAAUUGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.