miRNA: 3'- -AGUUGucGUGGAGUUCUCAAUUGGGA- -5'
miRNA: 3'- -AGUUGU--CG--------------UGGAGUUCUCAAUUGGGA- -5'
miRNA: 3'- -AGUUGUcGUGGAGUUCUCAAUUGGGa -5'
miRNA: 3'- -AGUUGUcGUGGAGUUCUCAAUUGGGA- -5'
miRNA: 3'- -AGUUGUCGUGGAGUUCUCAAUUGGGA- -5'
Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28253 | 5' | -48.9 | NC_005902.1 | + | 34792 | 0.76 | 0.829334 |
|
Target: 5'- aUUAAUgaUACCUUAGGAGUUAACCCUu -3' miRNA: 3'- -AGUUGucGUGGAGUUCUCAAUUGGGA- -5' |
|||||||
| 28253 | 5' | -48.9 | NC_005902.1 | + | 102227 | 0.77 | 0.750493 |
|
Target: 5'- aUCAACAauGUuuuacaucauuaauGCCUUAGGAGUUAACCCUu -3' miRNA: 3'- -AGUUGU--CG--------------UGGAGUUCUCAAUUGGGA- -5' |
|||||||
| 28253 | 5' | -48.9 | NC_005902.1 | + | 143567 | 0.78 | 0.743401 |
|
Target: 5'- gUCAAUGaCAUCUUAGGAGUUAACCCg -3' miRNA: 3'- -AGUUGUcGUGGAGUUCUCAAUUGGGa -5' |
|||||||
| 28253 | 5' | -48.9 | NC_005902.1 | + | 158055 | 0.84 | 0.433102 |
|
Target: 5'- aUCAACAaCAUCUUAAGGGUUAACCCUu -3' miRNA: 3'- -AGUUGUcGUGGAGUUCUCAAUUGGGA- -5' |
|||||||
| 28253 | 5' | -48.9 | NC_005902.1 | + | 177751 | 1.09 | 0.015641 |
|
Target: 5'- aUCAACAGCACCUCAAGAGUUAACCCUu -3' miRNA: 3'- -AGUUGUCGUGGAGUUCUCAAUUGGGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home