Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28253 | 5' | -48.9 | NC_005902.1 | + | 184727 | 0.74 | 0.899552 |
Target: 5'- aUCAACAaCACCUUAGGAaUUAAUCCUa -3' miRNA: 3'- -AGUUGUcGUGGAGUUCUcAAUUGGGA- -5' |
|||||||
28253 | 5' | -48.9 | NC_005902.1 | + | 4876 | 0.75 | 0.846511 |
Target: 5'- aUCAGUGGCACgUUuGGAGUUAACCCUu -3' miRNA: 3'- -AGUUGUCGUGgAGuUCUCAAUUGGGA- -5' |
|||||||
28253 | 5' | -48.9 | NC_005902.1 | + | 102227 | 0.77 | 0.750493 |
Target: 5'- aUCAACAauGUuuuacaucauuaauGCCUUAGGAGUUAACCCUu -3' miRNA: 3'- -AGUUGU--CG--------------UGGAGUUCUCAAUUGGGA- -5' |
|||||||
28253 | 5' | -48.9 | NC_005902.1 | + | 177751 | 1.09 | 0.015641 |
Target: 5'- aUCAACAGCACCUCAAGAGUUAACCCUu -3' miRNA: 3'- -AGUUGUCGUGGAGUUCUCAAUUGGGA- -5' |
|||||||
28253 | 5' | -48.9 | NC_005902.1 | + | 24091 | 0.66 | 0.99937 |
Target: 5'- aUUAACGaUGCCUUAGGAGUUAAaguguuuacCCCUa -3' miRNA: 3'- -AGUUGUcGUGGAGUUCUCAAUU---------GGGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home