miRNA display CGI


Results 81 - 100 of 280 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 85940 0.72 0.999692
Target:  5'- --aAUAUAGCUUAGGUGUUAAu---- -3'
miRNA:   3'- ccaUAUAUCGAAUCCACAAUUuccca -5'
28254 5' -43.2 NC_005902.1 + 122676 0.72 0.999692
Target:  5'- aGUGUAUAGCUUAGaGaUGUUAAAGaGUu -3'
miRNA:   3'- cCAUAUAUCGAAUC-C-ACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 51716 0.72 0.999608
Target:  5'- uGUAUAU-GCUUAaaUGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAuCGAAUccACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 5159 0.72 0.999608
Target:  5'- --gAUAUuGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- ccaUAUAuCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 85095 0.73 0.999505
Target:  5'- ----aAUAGCUUAGGaGUUuAGGGGUa -3'
miRNA:   3'- ccauaUAUCGAAUCCaCAAuUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 134439 0.73 0.999379
Target:  5'- ------cAGCUUAGGUaUUAAAGGGUu -3'
miRNA:   3'- ccauauaUCGAAUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 5216 0.73 0.999379
Target:  5'- aGUAUAUcGCUUAGGUGUUA---GGUa -3'
miRNA:   3'- cCAUAUAuCGAAUCCACAAUuucCCA- -5'
28254 5' -43.2 NC_005902.1 + 85373 0.73 0.999379
Target:  5'- -aUAUAUAGCUUAGauaUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUCcacAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 37290 0.73 0.999226
Target:  5'- --cAUAUAGCUUAaGUGUUAAAGGa- -3'
miRNA:   3'- ccaUAUAUCGAAUcCACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 162688 0.73 0.999226
Target:  5'- uGGUGUcAUcGCUUaaAGGgGUUAAAGGGUa -3'
miRNA:   3'- -CCAUA-UAuCGAA--UCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 99599 0.73 0.999226
Target:  5'- uGUAUAUAGCUUAaGUGUUAAAGa-- -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUCcca -5'
28254 5' -43.2 NC_005902.1 + 149952 0.73 0.999041
Target:  5'- --------cCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- ccauauaucGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 173217 0.73 0.999041
Target:  5'- -aUAUAUAaCUUAGGaGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUcGAAUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 26531 0.73 0.999041
Target:  5'- aGUAUAuaaUAGCUUAaaUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAU---AUCGAAUccACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 23290 0.74 0.998821
Target:  5'- --cAUAUAGCUUAaaUGUUAAAGGGa -3'
miRNA:   3'- ccaUAUAUCGAAUccACAAUUUCCCa -5'
28254 5' -43.2 NC_005902.1 + 107830 0.74 0.998821
Target:  5'- cGUAUAUAGCUUAGaUGUUAAAGa-- -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCcca -5'
28254 5' -43.2 NC_005902.1 + 28964 0.74 0.998247
Target:  5'- -cUGUAUAGCUUAGGUGUUAAc---- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUuccca -5'
28254 5' -43.2 NC_005902.1 + 78240 0.74 0.997455
Target:  5'- aGUAUAUAGCUUAGaUGUUAAAGaGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 153066 0.74 0.997455
Target:  5'- aGUAUAUAGUUUAGGUGUUAAc---- -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUuccca -5'
28254 5' -43.2 NC_005902.1 + 116814 0.74 0.997455
Target:  5'- aGGaGUAUA-CUUAGGUGUUAAAGGu- -3'
miRNA:   3'- -CCaUAUAUcGAAUCCACAAUUUCCca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.