miRNA display CGI


Results 61 - 80 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 143680 0.71 0.999857
Target:  5'- uGUAUAUAaUUUAGaUGUUAAAGGGUg -3'
miRNA:   3'- cCAUAUAUcGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 124519 0.71 0.999857
Target:  5'- -aUAUAUAGCUUAaGUaUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUcCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 131104 0.71 0.999857
Target:  5'- -aUAUAUAGCUUAaGUaUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUcCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 73078 0.71 0.999857
Target:  5'- uGUAUAUuaCUUAuGUGUUAAAGGGUg -3'
miRNA:   3'- cCAUAUAucGAAUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 173499 0.71 0.999857
Target:  5'- uGUAUAUAaUUUAGGUaUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUcGAAUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 145373 0.72 0.999814
Target:  5'- -aUAUAUAGCUUAaacGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUccaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 63275 0.72 0.999814
Target:  5'- --cAUAUAGCUUAaagGUUAAAGGGUu -3'
miRNA:   3'- ccaUAUAUCGAAUccaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 22594 0.72 0.999814
Target:  5'- -uUAUAUAGcCUUAGGauUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUC-GAAUCCacAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 90279 0.72 0.999814
Target:  5'- -aUAUAUAGCUUAaGUGUUAAAaGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUcCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 49629 0.72 0.999814
Target:  5'- -uUAUAUaAGcCUUAGGgGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUA-UC-GAAUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 94733 0.72 0.99976
Target:  5'- cGUAUAUAGUUUAaGUGUUAAAaGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 8444 0.72 0.99976
Target:  5'- aGUAUAucaaauaaUAGUUUAGGUGUUAAAaGGUu -3'
miRNA:   3'- cCAUAU--------AUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 1452 0.72 0.99976
Target:  5'- aGUAUAUAGCUUAaGUGUUAAAGc-- -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUCcca -5'
28254 5' -43.2 NC_005902.1 + 84969 0.72 0.999692
Target:  5'- -aUAUAUAGUgUAGaUGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGaAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 58263 0.72 0.999692
Target:  5'- aGUAUAUAGCUUcaGUGUUAAAaGGUa -3'
miRNA:   3'- cCAUAUAUCGAAucCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 100020 0.72 0.999692
Target:  5'- --aAUAUAGCUUAGGUGUUAAu---- -3'
miRNA:   3'- ccaUAUAUCGAAUCCACAAUUuccca -5'
28254 5' -43.2 NC_005902.1 + 122676 0.72 0.999692
Target:  5'- aGUGUAUAGCUUAGaGaUGUUAAAGaGUu -3'
miRNA:   3'- cCAUAUAUCGAAUC-C-ACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 97749 0.72 0.999692
Target:  5'- --cAUAUAGCUUAGGUGUUAAu---- -3'
miRNA:   3'- ccaUAUAUCGAAUCCACAAUUuccca -5'
28254 5' -43.2 NC_005902.1 + 42400 0.72 0.999692
Target:  5'- aGUAUAUAGCUUAGGUGUc------- -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAauuuccca -5'
28254 5' -43.2 NC_005902.1 + 118112 0.72 0.999692
Target:  5'- uGUAUAUAGUUaGGG-GUcAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAaUCCaCAaUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.