miRNA display CGI


Results 41 - 60 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 88325 0.69 0.999994
Target:  5'- -aUAUAUAGCUUAGa---UAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUCcacaAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 159783 0.69 0.999991
Target:  5'- aGUAUAUAGCUaa-GUaUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAaucCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 127735 0.69 0.999991
Target:  5'- --aGUAUAGUUUAa-UGUUAAAGGGUa -3'
miRNA:   3'- ccaUAUAUCGAAUccACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 162063 0.7 0.999987
Target:  5'- -uUAUAUAGUUUAGaUGUUAAAGGa- -3'
miRNA:   3'- ccAUAUAUCGAAUCcACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 160923 0.7 0.999982
Target:  5'- -aUAUAUAGCaUAGa-GUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGaAUCcaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 133270 0.7 0.999982
Target:  5'- -uUAUAUAaCUUAGGUGUUAAAaGGUu -3'
miRNA:   3'- ccAUAUAUcGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 39451 0.7 0.999982
Target:  5'- aGUAUAUAGCUUAGaUGUUAGAauGGa- -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUU--CCca -5'
28254 5' -43.2 NC_005902.1 + 127816 0.7 0.999976
Target:  5'- -cUAUAUAGCUUAuGUGUUAAAGaGUa -3'
miRNA:   3'- ccAUAUAUCGAAUcCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 58572 0.7 0.999976
Target:  5'- -cUAUAUAGCUUAuGUGUUAAAGaGUa -3'
miRNA:   3'- ccAUAUAUCGAAUcCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 114386 0.7 0.999976
Target:  5'- -aUAUAUAaCUUAaGUGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUcGAAUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 175654 0.7 0.999966
Target:  5'- aGUAUAUAGUUUAaGUaUUAAAGGGg -3'
miRNA:   3'- cCAUAUAUCGAAUcCAcAAUUUCCCa -5'
28254 5' -43.2 NC_005902.1 + 181431 0.71 0.999954
Target:  5'- aGUAUAUcGCUUAGaUGUUAAAGGa- -3'
miRNA:   3'- cCAUAUAuCGAAUCcACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 90636 0.71 0.999954
Target:  5'- -aUAUAUAaUUUAGGUGUUAAAGGa- -3'
miRNA:   3'- ccAUAUAUcGAAUCCACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 83776 0.71 0.999954
Target:  5'- aGUAUAUcaCUUAaGUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAucGAAUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 40997 0.71 0.999938
Target:  5'- --cAUAUAGCUUAGGUGcUAAAGa-- -3'
miRNA:   3'- ccaUAUAUCGAAUCCACaAUUUCcca -5'
28254 5' -43.2 NC_005902.1 + 107183 0.71 0.999918
Target:  5'- aGUAUAUAGCUUAaGG-GUUAAAaGGUu -3'
miRNA:   3'- cCAUAUAUCGAAU-CCaCAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 101227 0.71 0.999918
Target:  5'- --cAUAUAGCUUAaGaGUUAAAGGGUu -3'
miRNA:   3'- ccaUAUAUCGAAUcCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 136282 0.71 0.999918
Target:  5'- -aUAUAUAGUUUAGGUGUUGAGa--- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 25161 0.71 0.999891
Target:  5'- aGUAUAUAGCUUAGGgGUUAAAu--- -3'
miRNA:   3'- cCAUAUAUCGAAUCCaCAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 133704 0.71 0.999891
Target:  5'- --aAUGUAGCgagugagUAuGUGUUAAAGGGUa -3'
miRNA:   3'- ccaUAUAUCGa------AUcCACAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.