miRNA display CGI


Results 41 - 60 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 28813 1.06 0.098218
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 28964 0.74 0.998247
Target:  5'- -cUGUAUAGCUUAGGUGUUAAc---- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUuccca -5'
28254 5' -43.2 NC_005902.1 + 29135 0.81 0.922634
Target:  5'- -aUAUAUAGUUUAGGUaUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 29255 0.83 0.873875
Target:  5'- aGUAUAUAGCUUAGGUGUU--AGGa- -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAuuUCCca -5'
28254 5' -43.2 NC_005902.1 + 29494 0.93 0.411501
Target:  5'- -aUAUAUAGCUUAGGUGUUaAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAA-UUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 29611 0.9 0.522738
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAaGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 30829 0.9 0.533466
Target:  5'- uGUAUAUAGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 31126 0.67 1
Target:  5'- aGUAUAUAGCUUGGaUGUUAAAa--- -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 31459 0.84 0.840282
Target:  5'- aGUAUAUAGCUUAGGU---AAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCAcaaUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 34757 0.76 0.990802
Target:  5'- -aUAUAUAGCUUAGGUGUUAAGa--- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 36357 0.78 0.977481
Target:  5'- -aUAUAUAGCUUAGGU---AAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCAcaaUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 36842 0.69 0.999997
Target:  5'- aGUAUAUAGCUUAGGUaUUAAAa--- -3'
miRNA:   3'- cCAUAUAUCGAAUCCAcAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 37290 0.73 0.999226
Target:  5'- --cAUAUAGCUUAaGUGUUAAAGGa- -3'
miRNA:   3'- ccaUAUAUCGAAUcCACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 38452 0.83 0.873875
Target:  5'- -aUAUAUAGCUUAGGUGUUAcAGGa- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUuUCCca -5'
28254 5' -43.2 NC_005902.1 + 39307 0.96 0.308354
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGGa- -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 39451 0.7 0.999982
Target:  5'- aGUAUAUAGCUUAGaUGUUAGAauGGa- -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUU--CCca -5'
28254 5' -43.2 NC_005902.1 + 39612 0.86 0.752626
Target:  5'- aGUGaauUAUAGCUUAGGUGUUAAAGGa- -3'
miRNA:   3'- cCAU---AUAUCGAAUCCACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 40095 0.91 0.512093
Target:  5'- aGUAUAUAGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 40997 0.71 0.999938
Target:  5'- --cAUAUAGCUUAGGUGcUAAAGa-- -3'
miRNA:   3'- ccaUAUAUCGAAUCCACaAUUUCcca -5'
28254 5' -43.2 NC_005902.1 + 42267 1.07 0.07794
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.