miRNA display CGI


Results 41 - 60 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 13436 0.91 0.50154
Target:  5'- aGUAUAUAGCUUAaGUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 155244 0.91 0.50154
Target:  5'- cGUAUAUAGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 151227 0.91 0.512093
Target:  5'- aGUAUAUAaCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUcGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 131991 0.91 0.512093
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGGa- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 49473 0.91 0.512093
Target:  5'- aGUAUAUAaCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUcGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 43022 0.91 0.512093
Target:  5'- aGUAUAUAGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 40095 0.91 0.512093
Target:  5'- aGUAUAUAGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 146763 0.91 0.512093
Target:  5'- aGUAUAUacauGGUUUAGGUGUUAGAGGGUa -3'
miRNA:   3'- cCAUAUA----UCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 162434 0.91 0.512093
Target:  5'- uGUGUAUAGCUUAGGUGUUAAAGaGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 99651 0.91 0.512093
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGaGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 6230 0.91 0.512093
Target:  5'- aGUAUAUAGCUUAGuUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 52367 0.91 0.512093
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGaGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 80098 0.9 0.522738
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAaGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 29611 0.9 0.522738
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAaGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 23507 0.9 0.522738
Target:  5'- uGUAUAUAGCUUAaGUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 100701 0.9 0.533466
Target:  5'- uGUAUAUAGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 124421 0.9 0.533466
Target:  5'- uGUAUAUAGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 134192 0.9 0.533466
Target:  5'- uGUAUAUAGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 97477 0.9 0.533466
Target:  5'- uGUAUAUAaCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUcGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 30829 0.9 0.533466
Target:  5'- uGUAUAUAGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.