miRNA display CGI


Results 21 - 40 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 88607 1 0.192484
Target:  5'- --aGUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- ccaUAUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 122804 0.96 0.285857
Target:  5'- aGUAUAUAGCUUAGGgGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 114438 0.96 0.293209
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAGGa- -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 39307 0.96 0.308354
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGGa- -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 67032 0.96 0.316148
Target:  5'- aGUAUAUAGCUUAGGaGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 136088 0.95 0.332178
Target:  5'- uGUAUAUAGCUUAGGaGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 49995 0.94 0.366
Target:  5'- aGUAUAUAGCUUAGGaGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 136001 0.94 0.38378
Target:  5'- ----cAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- ccauaUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 135930 0.94 0.38378
Target:  5'- aGUAUGUAGCUUAGGUGUUAggaucaAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAU------UUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 145073 0.93 0.411501
Target:  5'- uGUAUAUAGCUUAGGUaUUAAAGGGUg -3'
miRNA:   3'- cCAUAUAUCGAAUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 29494 0.93 0.411501
Target:  5'- -aUAUAUAGCUUAGGUGUUaAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAA-UUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 154625 0.93 0.411501
Target:  5'- uGUAUAUAGCUUAGGUaUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 52205 0.93 0.421014
Target:  5'- aGGUAUAUcaCUUAGGUGUUAAAGGGUg -3'
miRNA:   3'- -CCAUAUAucGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 140962 0.92 0.44043
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAaGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 142026 0.92 0.460345
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAaGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 131155 0.92 0.47048
Target:  5'- uGUAUAUAGCUUAGGUaUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 167292 0.92 0.47048
Target:  5'- uGUAUAUAaCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUcGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 167185 0.91 0.491083
Target:  5'- cGUAUAUAGCUUAGGUGUUAAAaGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 43887 0.91 0.491083
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAGaGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 13436 0.91 0.50154
Target:  5'- aGUAUAUAGCUUAaGUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.