miRNA display CGI


Results 21 - 40 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 15341 0.84 0.812709
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGaGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 15510 0.8 0.949078
Target:  5'- -aUAUAUAGUUUAGGUGUUAAAaGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 16061 0.68 0.999999
Target:  5'- -aUAUAUAGCUUAGa---UAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCcacaAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 16531 0.75 0.995725
Target:  5'- -aUAUAUAGCUcAGGUGUUAAAGaGUu -3'
miRNA:   3'- ccAUAUAUCGAaUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 16600 0.76 0.993136
Target:  5'- -aUAUAcAGCUUAaGUGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUaUCGAAUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 16919 1 0.182277
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 18886 1.04 0.113326
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAGGGa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCCCa -5'
28254 5' -43.2 NC_005902.1 + 19914 0.78 0.977481
Target:  5'- uGUAUAUAGCUUAaGUaUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUcCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 20153 1.08 0.075707
Target:  5'- cGUAUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 20325 0.75 0.996959
Target:  5'- -aUAUAUAGCUUAGGUGUUAAu---- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUuccca -5'
28254 5' -43.2 NC_005902.1 + 22594 0.72 0.999814
Target:  5'- -uUAUAUAGcCUUAGGauUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUC-GAAUCCacAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 22655 0.76 0.990802
Target:  5'- -aUAUAUAGCUUAGaUGUUaAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCcACAA-UUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 23290 0.74 0.998821
Target:  5'- --cAUAUAGCUUAaaUGUUAAAGGGa -3'
miRNA:   3'- ccaUAUAUCGAAUccACAAUUUCCCa -5'
28254 5' -43.2 NC_005902.1 + 23507 0.9 0.522738
Target:  5'- uGUAUAUAGCUUAaGUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 23652 1.04 0.113326
Target:  5'- aGUAUGUAGCUUAGGUGUUAAAGGGa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCCCa -5'
28254 5' -43.2 NC_005902.1 + 25161 0.71 0.999891
Target:  5'- aGUAUAUAGCUUAGGgGUUAAAu--- -3'
miRNA:   3'- cCAUAUAUCGAAUCCaCAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 26531 0.73 0.999041
Target:  5'- aGUAUAuaaUAGCUUAaaUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAU---AUCGAAUccACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 27813 0.85 0.793339
Target:  5'- uGUAUAUAGCUUAGGcaUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCacAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 27922 0.66 1
Target:  5'- uGUAUAUAGCUUAaGUaUUAAAGGu- -3'
miRNA:   3'- cCAUAUAUCGAAUcCAcAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 28192 0.77 0.989422
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAu--- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUccca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.