miRNA display CGI


Results 21 - 40 of 280 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 169167 0.88 0.621431
Target:  5'- --gAUAUAGCUUAGGUGUUAAAGGa- -3'
miRNA:   3'- ccaUAUAUCGAAUCCACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 167292 0.92 0.47048
Target:  5'- uGUAUAUAaCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUcGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 167185 0.91 0.491083
Target:  5'- cGUAUAUAGCUUAGGUGUUAAAaGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 165979 0.9 0.555148
Target:  5'- uGUAUAUGGCUUAuGUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 165757 0.75 0.996385
Target:  5'- aGUAUAUGuuaaCUUAGGUGUUAAAGGa- -3'
miRNA:   3'- cCAUAUAUc---GAAUCCACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 164874 0.84 0.831302
Target:  5'- -aUAUAUAGCUUAaGUGUUAAAGGGa -3'
miRNA:   3'- ccAUAUAUCGAAUcCACAAUUUCCCa -5'
28254 5' -43.2 NC_005902.1 + 164731 0.77 0.986181
Target:  5'- aGUAUAUAGCUUAGaUGUUAAAaGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 163428 0.75 0.996795
Target:  5'- -aUAUAUAGCUUAGGUGUUAacccuuuaaauccuAAGGc- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAU--------------UUCCca -5'
28254 5' -43.2 NC_005902.1 + 162785 1 0.182277
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 162754 0.77 0.987885
Target:  5'- -aUAUAUAGCUUAGGUaUUAAAGGa- -3'
miRNA:   3'- ccAUAUAUCGAAUCCAcAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 162688 0.73 0.999226
Target:  5'- uGGUGUcAUcGCUUaaAGGgGUUAAAGGGUa -3'
miRNA:   3'- -CCAUA-UAuCGAA--UCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 162631 0.79 0.965291
Target:  5'- uGUAUAUAGCUUGGGUGUUAAc---- -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUuccca -5'
28254 5' -43.2 NC_005902.1 + 162576 0.87 0.665929
Target:  5'- aGUAUAUAGaUUAGGUGUUAAAGGGc -3'
miRNA:   3'- cCAUAUAUCgAAUCCACAAUUUCCCa -5'
28254 5' -43.2 NC_005902.1 + 162434 0.91 0.512093
Target:  5'- uGUGUAUAGCUUAGGUGUUAAAGaGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 162063 0.7 0.999987
Target:  5'- -uUAUAUAGUUUAGaUGUUAAAGGa- -3'
miRNA:   3'- ccAUAUAUCGAAUCcACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 160923 0.7 0.999982
Target:  5'- -aUAUAUAGCaUAGa-GUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGaAUCcaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 159783 0.69 0.999991
Target:  5'- aGUAUAUAGCUaa-GUaUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAaucCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 157888 0.77 0.987885
Target:  5'- -uUAUAUAGCUUAGGUGUUAAAa--- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 157113 0.67 1
Target:  5'- aGUAUA-AGCuUUAGGauUUAAAGGGUa -3'
miRNA:   3'- cCAUAUaUCG-AAUCCacAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 157065 0.8 0.953531
Target:  5'- uGUGUAUAGCUUAGGUGUUAAc---- -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUuccca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.