miRNA display CGI


Results 1 - 20 of 280 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 184895 0.82 0.889166
Target:  5'- uGUAUAcAGCUUAGGUcUUAAAGGGUu -3'
miRNA:   3'- cCAUAUaUCGAAUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 184780 0.75 0.996385
Target:  5'- -aUAUAUAGCcUAGGUGUUGAAGaGUu -3'
miRNA:   3'- ccAUAUAUCGaAUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 184631 0.77 0.986181
Target:  5'- cGUAUAUAGCUUAGGgGUUAAAaaGGUg -3'
miRNA:   3'- cCAUAUAUCGAAUCCaCAAUUUc-CCA- -5'
28254 5' -43.2 NC_005902.1 + 183020 0.67 1
Target:  5'- aGUAUAUAGCUUAGaUGUuaauauuuuaaaaacUGAAGGa- -3'
miRNA:   3'- cCAUAUAUCGAAUCcACA---------------AUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 182967 0.77 0.989422
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAucGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUccCA- -5'
28254 5' -43.2 NC_005902.1 + 182665 0.68 0.999999
Target:  5'- -aUGUAUAGCUUAGGUGUa------- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAauuuccca -5'
28254 5' -43.2 NC_005902.1 + 181431 0.71 0.999954
Target:  5'- aGUAUAUcGCUUAGaUGUUAAAGGa- -3'
miRNA:   3'- cCAUAUAuCGAAUCcACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 180658 0.66 1
Target:  5'- -aUAUAUAGUUUAGuUGUUAAAaGGUg -3'
miRNA:   3'- ccAUAUAUCGAAUCcACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 180393 0.83 0.857561
Target:  5'- aGUAUAUAGCUUAauUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUccACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 179727 0.81 0.916499
Target:  5'- uGUAUAUGGCUUAGGUcuuaaagaUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCAc-------AAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 178441 0.87 0.676999
Target:  5'- aGUAUAUAaUUUAGGUGUUAAAGGGUg -3'
miRNA:   3'- cCAUAUAUcGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 177627 0.68 0.999999
Target:  5'- uGUAUAUAGUUUAGGUGUaaAAAGuGa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAa-UUUCcCa -5'
28254 5' -43.2 NC_005902.1 + 175654 0.7 0.999966
Target:  5'- aGUAUAUAGUUUAaGUaUUAAAGGGg -3'
miRNA:   3'- cCAUAUAUCGAAUcCAcAAUUUCCCa -5'
28254 5' -43.2 NC_005902.1 + 173499 0.71 0.999857
Target:  5'- uGUAUAUAaUUUAGGUaUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUcGAAUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 173217 0.73 0.999041
Target:  5'- -aUAUAUAaCUUAGGaGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUcGAAUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 172857 1.11 0.047344
Target:  5'- gGGUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- -CCAUAUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 170891 0.69 0.999997
Target:  5'- aGUAUAUAGCUUAcaUGUUAAAaGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUccACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 170619 0.84 0.812709
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGaGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 169577 0.87 0.698999
Target:  5'- aGUGUAUAGUUUAGGUGUUAAAaGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 169528 0.68 1
Target:  5'- -cUAUAUAuCUcAGGUGUUAcAGGGUu -3'
miRNA:   3'- ccAUAUAUcGAaUCCACAAUuUCCCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.