miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 1178 0.91 0.50154
Target:  5'- -aUAUAUacAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUA--UCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 1294 0.69 0.999997
Target:  5'- -aUAUAUAGCUcAGGUGUUAggauuaauuccuAAGGuGUu -3'
miRNA:   3'- ccAUAUAUCGAaUCCACAAU------------UUCC-CA- -5'
28254 5' -43.2 NC_005902.1 + 1452 0.72 0.99976
Target:  5'- aGUAUAUAGCUUAaGUGUUAAAGc-- -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUCcca -5'
28254 5' -43.2 NC_005902.1 + 3109 0.77 0.986181
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAa--- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 3478 0.88 0.654826
Target:  5'- uGUAUAUAGCUUAGGUGUUAaaaucGAGuGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAU-----UUC-CCA- -5'
28254 5' -43.2 NC_005902.1 + 4815 0.68 1
Target:  5'- aGUAUAUAaCUUAGGaGUUAAAGGc- -3'
miRNA:   3'- cCAUAUAUcGAAUCCaCAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 5159 0.72 0.999608
Target:  5'- --gAUAUuGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- ccaUAUAuCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 5216 0.73 0.999379
Target:  5'- aGUAUAUcGCUUAGGUGUUA---GGUa -3'
miRNA:   3'- cCAUAUAuCGAAUCCACAAUuucCCA- -5'
28254 5' -43.2 NC_005902.1 + 5422 0.83 0.857561
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGa-- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCcca -5'
28254 5' -43.2 NC_005902.1 + 5691 0.77 0.984299
Target:  5'- uGUAUAUAGCUUAGGgGUUAAAGa-- -3'
miRNA:   3'- cCAUAUAUCGAAUCCaCAAUUUCcca -5'
28254 5' -43.2 NC_005902.1 + 6230 0.91 0.512093
Target:  5'- aGUAUAUAGCUUAGuUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 6346 0.77 0.987885
Target:  5'- -aUAUAUAGCUUAGGUuUUAAAGGa- -3'
miRNA:   3'- ccAUAUAUCGAAUCCAcAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 8444 0.72 0.99976
Target:  5'- aGUAUAucaaauaaUAGUUUAGGUGUUAAAaGGUu -3'
miRNA:   3'- cCAUAU--------AUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 10429 0.68 0.999998
Target:  5'- uGUAUAcGGCUUAcGUaUUAAAGGGUa -3'
miRNA:   3'- cCAUAUaUCGAAUcCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 11071 0.67 1
Target:  5'- uGUAUAUAGCUUAaGUGUUAGAa--- -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 11449 0.85 0.773281
Target:  5'- cGUAUAUAGCUUAGGUGUUAAcucGGUc -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUuc-CCA- -5'
28254 5' -43.2 NC_005902.1 + 12863 0.78 0.979959
Target:  5'- uGUAUAUAaCUUAGGaGUUAAGGGGUu -3'
miRNA:   3'- cCAUAUAUcGAAUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 13226 1.02 0.154483
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 13436 0.91 0.50154
Target:  5'- aGUAUAUAGCUUAaGUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 15192 0.85 0.793339
Target:  5'- uGUAUAUAGCUUAcaUGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUccACAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.