miRNA display CGI


Results 61 - 80 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 42400 0.72 0.999692
Target:  5'- aGUAUAUAGCUUAGGUGUc------- -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAauuuccca -5'
28254 5' -43.2 NC_005902.1 + 43022 0.91 0.512093
Target:  5'- aGUAUAUAGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 43887 0.91 0.491083
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAGaGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 44046 0.67 1
Target:  5'- uGUAUAUAGCUUAaaUGUUAAAGaGUu -3'
miRNA:   3'- cCAUAUAUCGAAUccACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 44107 0.69 0.999996
Target:  5'- aGUAUAUAGUUUAGcUGUUAAAGaGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 45121 0.78 0.971859
Target:  5'- cGUAUAUAGCUUAGGUGUUAu----- -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUuuccca -5'
28254 5' -43.2 NC_005902.1 + 48268 0.77 0.986181
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAa--- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 48290 0.87 0.698999
Target:  5'- -aUAUAUAGCUUAaGUGUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 48420 0.67 1
Target:  5'- uGUAUAUA-CUUAGGU---AAAGGGUu -3'
miRNA:   3'- cCAUAUAUcGAAUCCAcaaUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 48608 0.77 0.986181
Target:  5'- aGUGUAUAGCUUAGaUGUUAAAaGGUg -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 48611 0.8 0.949078
Target:  5'- -aUAUAUAGUUUAGGUGUUAAAaGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 49036 0.67 1
Target:  5'- --gAUAaAGCUcUAGGaGUUAAGGGGUu -3'
miRNA:   3'- ccaUAUaUCGA-AUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 49473 0.91 0.512093
Target:  5'- aGUAUAUAaCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUcGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 49629 0.72 0.999814
Target:  5'- -uUAUAUaAGcCUUAGGgGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUA-UC-GAAUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 49995 0.94 0.366
Target:  5'- aGUAUAUAGCUUAGGaGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 50084 0.66 1
Target:  5'- uGUAUAUAGCUUAGGUaUUAAc---- -3'
miRNA:   3'- cCAUAUAUCGAAUCCAcAAUUuccca -5'
28254 5' -43.2 NC_005902.1 + 50229 0.83 0.857561
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGa-- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCcca -5'
28254 5' -43.2 NC_005902.1 + 50496 0.81 0.916499
Target:  5'- uGUGUAucUAGUUUAGGUGUUAAAGGa- -3'
miRNA:   3'- cCAUAU--AUCGAAUCCACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 51463 0.84 0.812709
Target:  5'- uGUAUAUAGCUUAaaUGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUccACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 51716 0.72 0.999608
Target:  5'- uGUAUAU-GCUUAaaUGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAuCGAAUccACAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.