miRNA display CGI


Results 61 - 80 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 3478 0.88 0.654826
Target:  5'- uGUAUAUAGCUUAGGUGUUAaaaucGAGuGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAU-----UUC-CCA- -5'
28254 5' -43.2 NC_005902.1 + 96037 0.87 0.709904
Target:  5'- -aUAUAUAaCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUcGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 104205 1.02 0.158833
Target:  5'- -uUAUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 125576 1 0.182277
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 67032 0.96 0.316148
Target:  5'- aGUAUAUAGCUUAGGaGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 154625 0.93 0.411501
Target:  5'- uGUAUAUAGCUUAGGUaUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 167185 0.91 0.491083
Target:  5'- cGUAUAUAGCUUAGGUGUUAAAaGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 52367 0.91 0.512093
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGaGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 29611 0.9 0.522738
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAaGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 134192 0.9 0.533466
Target:  5'- uGUAUAUAGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 92202 0.77 0.989422
Target:  5'- uGUAUAUAGCUUAGGUaUUAAAuGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCAcAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 157888 0.77 0.987885
Target:  5'- -uUAUAUAGCUUAGGUGUUAAAa--- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 145976 0.85 0.763023
Target:  5'- -aUAUAUAGCUUAaGUGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 156432 0.85 0.793339
Target:  5'- aGUAUAUAGCUUAaaUGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUccACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 50229 0.83 0.857561
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGa-- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCcca -5'
28254 5' -43.2 NC_005902.1 + 116860 0.83 0.873875
Target:  5'- --cAUAUAGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- ccaUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 29135 0.81 0.922634
Target:  5'- -aUAUAUAGUUUAGGUaUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 95983 0.79 0.957714
Target:  5'- uGUAUAUAaCUUAGGUGUU-AAGGGUu -3'
miRNA:   3'- cCAUAUAUcGAAUCCACAAuUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 154953 0.78 0.977481
Target:  5'- uGUucAUAGCUUGGGUGUUAAAaGGUg -3'
miRNA:   3'- cCAuaUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 114843 0.77 0.984299
Target:  5'- uGUAUAUAGCUUAaGUGUuaaaaagguUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUcCACA---------AUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.