Results 61 - 80 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28255 | 5' | -44.4 | NC_005902.1 | + | 156439 | 0.85 | 0.63146 |
Target: 5'- cACCUAAGCUAUAUacaaacaAGCAUAGUGAGUAa -3' miRNA: 3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 42986 | 0.8 | 0.860651 |
Target: 5'- cAUCUAAGCUAUAUauaugaccaAGUAUAGCAAAUGa -3' miRNA: 3'- -UGGAUUCGAUAUG---------UCGUAUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 23616 | 0.78 | 0.919621 |
Target: 5'- cACCUAAGCUAUACA-CAcaaauaaaugUAGCAAGUGa -3' miRNA: 3'- -UGGAUUCGAUAUGUcGU----------AUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 164707 | 0.69 | 0.999864 |
Target: 5'- uGCCUAAGCUAUAaa-UAUAGUAAGa- -3' miRNA: 3'- -UGGAUUCGAUAUgucGUAUCGUUUau -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 44023 | 0.69 | 0.999897 |
Target: 5'- cACCUAAGCUAUAUAcacGCAUuuGUAuAUAg -3' miRNA: 3'- -UGGAUUCGAUAUGU---CGUAu-CGUuUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 54946 | 0.69 | 0.999864 |
Target: 5'- uACUUAAGCUAUauaugaACAGaUAUAGUGAGUGa -3' miRNA: 3'- -UGGAUUCGAUA------UGUC-GUAUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 131673 | 0.69 | 0.999864 |
Target: 5'- cACCUAAGCUAUACAuacaCAaaugAGCAuAUAu -3' miRNA: 3'- -UGGAUUCGAUAUGUc---GUa---UCGUuUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 131079 | 0.69 | 0.999864 |
Target: 5'- uUCUAAgGCuUAUACaaguaAGCAUAGCAAAUGa -3' miRNA: 3'- uGGAUU-CG-AUAUG-----UCGUAUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 117738 | 0.69 | 0.999864 |
Target: 5'- cAUCUAAGCUAUAU-GCA-AGUAAGUAu -3' miRNA: 3'- -UGGAUUCGAUAUGuCGUaUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 172824 | 0.81 | 0.833277 |
Target: 5'- cACCUAAGCUAUAUaugaguaAGCAUcGCAAAUGg -3' miRNA: 3'- -UGGAUUCGAUAUG-------UCGUAuCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 158341 | 0.81 | 0.824914 |
Target: 5'- uACCUAGGCUgcuauAUACuaacaAGCGUAGCAAAUAa -3' miRNA: 3'- -UGGAUUCGA-----UAUG-----UCGUAUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 98948 | 0.81 | 0.815418 |
Target: 5'- cCCUAAGCUAUAUaaugAGUAUAGUAAGUAa -3' miRNA: 3'- uGGAUUCGAUAUG----UCGUAUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 31425 | 0.84 | 0.687852 |
Target: 5'- uACCUAAGCUAUAUacaaacaAGUGUAGCAAGUGa -3' miRNA: 3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 75911 | 0.83 | 0.722196 |
Target: 5'- uACCUAAGCUAUAUacaAGCAagggUAGCAAAUGa -3' miRNA: 3'- -UGGAUUCGAUAUG---UCGU----AUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 109367 | 0.83 | 0.722196 |
Target: 5'- cACUUAAGCUAUAUauaAGCAUAGCAAAc- -3' miRNA: 3'- -UGGAUUCGAUAUG---UCGUAUCGUUUau -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 28162 | 0.83 | 0.743894 |
Target: 5'- cACCUAAGCUAUAUaaAGUGUAGCAAGc- -3' miRNA: 3'- -UGGAUUCGAUAUG--UCGUAUCGUUUau -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 81060 | 0.83 | 0.743894 |
Target: 5'- cAUCUAAGCUAUACaauuaAGCAUAGCAAGc- -3' miRNA: 3'- -UGGAUUCGAUAUG-----UCGUAUCGUUUau -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 177836 | 0.82 | 0.774479 |
Target: 5'- uGCCUAAGCUAUAUacaagugAGCAUAGUAAAc- -3' miRNA: 3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUau -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 81184 | 0.82 | 0.775512 |
Target: 5'- uACCUAAGCUAUAUaugAGCGUaacaAGCAAGUAu -3' miRNA: 3'- -UGGAUUCGAUAUG---UCGUA----UCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 116891 | 0.81 | 0.805719 |
Target: 5'- uCCUAAGaCUAUACaagugAGCAUAGCAAAUGa -3' miRNA: 3'- uGGAUUC-GAUAUG-----UCGUAUCGUUUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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