miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28255 5' -44.4 NC_005902.1 + 116640 0.69 0.999817
Target:  5'- cACCUAAGCUAUAUacaagugAGUAUaauaAGCAuAUAg -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUA----UCGUuUAU- -5'
28255 5' -44.4 NC_005902.1 + 61629 0.68 0.999943
Target:  5'- cAUCUAAGCUAUAUacaaaugauugAGUAUAGCuuAGAUGu -3'
miRNA:   3'- -UGGAUUCGAUAUG-----------UCGUAUCG--UUUAU- -5'
28255 5' -44.4 NC_005902.1 + 163457 0.7 0.999391
Target:  5'- uCCUAAgGCUAUAUaaguaAGUAUAGCAAAc- -3'
miRNA:   3'- uGGAUU-CGAUAUG-----UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 73105 0.72 0.997394
Target:  5'- aACCUAAaUUAUAUauaagcaAGCAUAGCAAGUAa -3'
miRNA:   3'- -UGGAUUcGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 3385 0.74 0.989158
Target:  5'- cACCUAAGCUAUACAuacaaCAUAGCu---- -3'
miRNA:   3'- -UGGAUUCGAUAUGUc----GUAUCGuuuau -5'
28255 5' -44.4 NC_005902.1 + 147599 0.75 0.973647
Target:  5'- cACCUAAGCUAUAUauaaaugAGCGcAGUAAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUaUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 91866 0.77 0.955733
Target:  5'- cACCUAAGCUAUAUacaaauaAGaGUAGCAAAUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCgUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 110920 0.78 0.918996
Target:  5'- uACCUAAGCUAUAUaugagugGGUAUAGUAAGUu -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAu -5'
28255 5' -44.4 NC_005902.1 + 109925 0.8 0.860651
Target:  5'- gACCUAAGCUAUAU-GCAaacaUAGCGAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUGuCGU----AUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 31425 0.84 0.687852
Target:  5'- uACCUAAGCUAUAUacaaacaAGUGUAGCAAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 75911 0.83 0.722196
Target:  5'- uACCUAAGCUAUAUacaAGCAagggUAGCAAAUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG---UCGU----AUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 156439 0.85 0.63146
Target:  5'- cACCUAAGCUAUAUacaaacaAGCAUAGUGAGUAa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 109367 0.83 0.722196
Target:  5'- cACUUAAGCUAUAUauaAGCAUAGCAAAc- -3'
miRNA:   3'- -UGGAUUCGAUAUG---UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 28162 0.83 0.743894
Target:  5'- cACCUAAGCUAUAUaaAGUGUAGCAAGc- -3'
miRNA:   3'- -UGGAUUCGAUAUG--UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 131079 0.69 0.999864
Target:  5'- uUCUAAgGCuUAUACaaguaAGCAUAGCAAAUGa -3'
miRNA:   3'- uGGAUU-CG-AUAUG-----UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 117738 0.69 0.999864
Target:  5'- cAUCUAAGCUAUAU-GCA-AGUAAGUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGuCGUaUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 15432 0.69 0.999861
Target:  5'- cACCUAAGCUAUAUauaaauaAGCAUauauaGGuCAGGUGu -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUA-----UC-GUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 13404 0.68 0.999969
Target:  5'- uACCUAAGCUAUAUaugugAGUAUAaCAAAc- -3'
miRNA:   3'- -UGGAUUCGAUAUG-----UCGUAUcGUUUau -5'
28255 5' -44.4 NC_005902.1 + 58626 0.69 0.999817
Target:  5'- gACUUAAGCUGUAUauaaacaAGCGUAaCAAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUcGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 142161 0.68 0.999969
Target:  5'- uAUUUAAGCUAUAUAugaaCAUAGUAAAUAa -3'
miRNA:   3'- -UGGAUUCGAUAUGUc---GUAUCGUUUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.