miRNA display CGI


Results 41 - 60 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28255 5' -44.4 NC_005902.1 + 67715 0.72 0.997877
Target:  5'- uCCUAGGCUAUAUAGaaauUAGCAu--- -3'
miRNA:   3'- uGGAUUCGAUAUGUCgu--AUCGUuuau -5'
28255 5' -44.4 NC_005902.1 + 73105 0.72 0.997394
Target:  5'- aACCUAAaUUAUAUauaagcaAGCAUAGCAAGUAa -3'
miRNA:   3'- -UGGAUUcGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 75911 0.83 0.722196
Target:  5'- uACCUAAGCUAUAUacaAGCAagggUAGCAAAUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG---UCGU----AUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 76880 0.66 0.999999
Target:  5'- uAUCUAAGCUAUAUauaaaaacaAGUAcuGCAAGUAa -3'
miRNA:   3'- -UGGAUUCGAUAUG---------UCGUauCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 78086 0.77 0.955733
Target:  5'- cCUUAAGCUAUAUaugacuaAGUAUAGCGAAUAa -3'
miRNA:   3'- uGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 80743 0.72 0.997442
Target:  5'- cACCUAAGCUAUAUAcaaacaaauGCAgugAGUggGUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGU---------CGUa--UCGuuUAU- -5'
28255 5' -44.4 NC_005902.1 + 81060 0.83 0.743894
Target:  5'- cAUCUAAGCUAUACaauuaAGCAUAGCAAGc- -3'
miRNA:   3'- -UGGAUUCGAUAUG-----UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 81184 0.82 0.775512
Target:  5'- uACCUAAGCUAUAUaugAGCGUaacaAGCAAGUAu -3'
miRNA:   3'- -UGGAUUCGAUAUG---UCGUA----UCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 81290 0.8 0.842356
Target:  5'- cAUCUAAGCUAUAUacaaauaAGUAUAGCAAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 81845 0.69 0.999763
Target:  5'- cACCUAAGCUAUAUAaacaaauGCuaAGUAAGUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGU-------CGuaUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 86399 0.69 0.999897
Target:  5'- cACCUAAGCUAUAUacaAGUG-AGCAuAUAc -3'
miRNA:   3'- -UGGAUUCGAUAUG---UCGUaUCGUuUAU- -5'
28255 5' -44.4 NC_005902.1 + 86451 0.67 0.999983
Target:  5'- cACUUAAGCUAUAUacaaauaAGUGcAGCGAAUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUaUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 88303 0.67 0.999984
Target:  5'- cACCUAAGCUAUAU-GCAaauaaauauaUAGCuuAGAUAa -3'
miRNA:   3'- -UGGAUUCGAUAUGuCGU----------AUCG--UUUAU- -5'
28255 5' -44.4 NC_005902.1 + 90066 0.67 0.999992
Target:  5'- cACCUAAGUUAUAUacaAGUGUAaCAAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG---UCGUAUcGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 90246 0.66 0.999997
Target:  5'- uACUUAAaUUAUAUaaacaAGCAUAGCAAGUGa -3'
miRNA:   3'- -UGGAUUcGAUAUG-----UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 91866 0.77 0.955733
Target:  5'- cACCUAAGCUAUAUacaaauaAGaGUAGCAAAUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCgUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 92017 0.79 0.892361
Target:  5'- uACCUAAGCUAUAUAugaguaaaCAUAGCAAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUGUc-------GUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 93434 0.74 0.987564
Target:  5'- uAUUUAAGCUAUG-AGCAUAGUGAAUAa -3'
miRNA:   3'- -UGGAUUCGAUAUgUCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 93720 0.73 0.994006
Target:  5'- uACCUAAGCUAUAUagaacaAGUGUAGUAAu-- -3'
miRNA:   3'- -UGGAUUCGAUAUG------UCGUAUCGUUuau -5'
28255 5' -44.4 NC_005902.1 + 97184 0.75 0.981462
Target:  5'- cACCUAAGCUAUAUaugaaugAGgAUAGUGAGUAa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCgUAUCGUUUAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.