miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28255 5' -44.4 NC_005902.1 + 31425 0.84 0.687852
Target:  5'- uACCUAAGCUAUAUacaaacaAGUGUAGCAAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 36171 0.78 0.918996
Target:  5'- cAUCUAAGCUAUAUauaaacaAGUGUAGCAAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 36323 0.66 0.999997
Target:  5'- uCCUAAgGCuUAUACaagugAGCAUAGUGAAUGa -3'
miRNA:   3'- uGGAUU-CG-AUAUG-----UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 36808 0.7 0.999702
Target:  5'- cACUUAAGCUAUACAcagauagauGCA--GCAAAUGa -3'
miRNA:   3'- -UGGAUUCGAUAUGU---------CGUauCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 39105 0.69 0.999817
Target:  5'- cACCUAAGCUAUAUacaaacaAGUGUuGCAAAc- -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAuCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 39417 0.73 0.993001
Target:  5'- uACCUAAGCUAUAUacgaguaaauguAGUA-AGCAAGUAu -3'
miRNA:   3'- -UGGAUUCGAUAUG------------UCGUaUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 42986 0.8 0.860651
Target:  5'- cAUCUAAGCUAUAUauaugaccaAGUAUAGCAAAUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG---------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 43854 0.71 0.998535
Target:  5'- uUUUAAGCUAUAUacaaacaAGUGUAGCAAAUAa -3'
miRNA:   3'- uGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 44023 0.69 0.999897
Target:  5'- cACCUAAGCUAUAUAcacGCAUuuGUAuAUAg -3'
miRNA:   3'- -UGGAUUCGAUAUGU---CGUAu-CGUuUAU- -5'
28255 5' -44.4 NC_005902.1 + 46943 0.94 0.260265
Target:  5'- uACCUAAGCUAUAUgcaAGCAUAGCAAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG---UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 49443 0.7 0.999702
Target:  5'- cACCUAAGUUAUAaauaGGgGcAGCAAAUAa -3'
miRNA:   3'- -UGGAUUCGAUAUg---UCgUaUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 49962 0.86 0.575067
Target:  5'- uCCUAAGCUAUAUacaaacaAGCAUGGCAAGUGa -3'
miRNA:   3'- uGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 50219 0.69 0.999897
Target:  5'- cACCUAAGCUAUAUauAGCuUAGguGu-- -3'
miRNA:   3'- -UGGAUUCGAUAUG--UCGuAUCguUuau -5'
28255 5' -44.4 NC_005902.1 + 51617 0.86 0.587408
Target:  5'- uACCUAAGCUGUGaauaAGCGUAGCGAGc- -3'
miRNA:   3'- -UGGAUUCGAUAUg---UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 54894 0.68 0.999923
Target:  5'- uACCUAAGCUAUAUAcaaaagaaCAUAGUGAAa- -3'
miRNA:   3'- -UGGAUUCGAUAUGUc-------GUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 54946 0.69 0.999864
Target:  5'- uACUUAAGCUAUauaugaACAGaUAUAGUGAGUGa -3'
miRNA:   3'- -UGGAUUCGAUA------UGUC-GUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 56216 0.69 0.999822
Target:  5'- cGCCUAAuaUAU-CAGCAUGGgAAGUGu -3'
miRNA:   3'- -UGGAUUcgAUAuGUCGUAUCgUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 58626 0.69 0.999817
Target:  5'- gACUUAAGCUGUAUauaaacaAGCGUAaCAAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUcGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 58821 0.69 0.999769
Target:  5'- aACUUAAGCUAUA-AGCAaAGCAuAUAc -3'
miRNA:   3'- -UGGAUUCGAUAUgUCGUaUCGUuUAU- -5'
28255 5' -44.4 NC_005902.1 + 61629 0.68 0.999943
Target:  5'- cAUCUAAGCUAUAUacaaaugauugAGUAUAGCuuAGAUGu -3'
miRNA:   3'- -UGGAUUCGAUAUG-----------UCGUAUCG--UUUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.