miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28255 5' -44.4 NC_005902.1 + 157086 1.08 0.039952
Target:  5'- cACCUAAGCUAUACAGCAUAGCAAAUAa -3'
miRNA:   3'- -UGGAUUCGAUAUGUCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 156439 0.85 0.63146
Target:  5'- cACCUAAGCUAUAUacaaacaAGCAUAGUGAGUAa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 153654 0.68 0.999941
Target:  5'- cACUUAAaCUAUAUacgaacaAGCGUAGCGAGUGa -3'
miRNA:   3'- -UGGAUUcGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 151197 0.68 0.999923
Target:  5'- cACCUAAGUuaUAUAUAGaUGUAGUGAAUGa -3'
miRNA:   3'- -UGGAUUCG--AUAUGUC-GUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 148791 0.68 0.999967
Target:  5'- aGCUUAAGUguuaagauaaaguUAUACauaagcaAGCGUAGCAAGUGa -3'
miRNA:   3'- -UGGAUUCG-------------AUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 148249 0.67 0.999992
Target:  5'- cAUUUAAGCUuauAUACaaauaAGCAUAGCAAGc- -3'
miRNA:   3'- -UGGAUUCGA---UAUG-----UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 147599 0.75 0.973647
Target:  5'- cACCUAAGCUAUAUauaaaugAGCGcAGUAAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUaUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 145054 0.67 0.999984
Target:  5'- cACCUAAGCUAUAUgugAGUguauAUAGCuuAGGUAu -3'
miRNA:   3'- -UGGAUUCGAUAUG---UCG----UAUCG--UUUAU- -5'
28255 5' -44.4 NC_005902.1 + 143776 0.68 0.999958
Target:  5'- uCCUAAgGCuUAUACaagugAGCAUAGCAAAc- -3'
miRNA:   3'- uGGAUU-CG-AUAUG-----UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 142221 0.67 0.999989
Target:  5'- uCCUAAgGCUugcACgAGCAUAGCAAAc- -3'
miRNA:   3'- uGGAUU-CGAua-UG-UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 142161 0.68 0.999969
Target:  5'- uAUUUAAGCUAUAUAugaaCAUAGUAAAUAa -3'
miRNA:   3'- -UGGAUUCGAUAUGUc---GUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 140928 0.91 0.33559
Target:  5'- cACCUAAGCUAUAUacgaacaAGCAUAGCAAGUAa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 139573 0.67 0.999992
Target:  5'- cCCUAAgGCUuauAUACaaguaAGCAUAGCAAAc- -3'
miRNA:   3'- uGGAUU-CGA---UAUG-----UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 137782 0.75 0.979328
Target:  5'- cACCUAAGCUAUAUauacaaauaAGUAUagugAGCAAAUAu -3'
miRNA:   3'- -UGGAUUCGAUAUG---------UCGUA----UCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 136247 0.66 0.999999
Target:  5'- uACCcAAGUUAUAUaugaguaGGUAUAGCAAAc- -3'
miRNA:   3'- -UGGaUUCGAUAUG-------UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 135965 0.9 0.370244
Target:  5'- uACCUAAGCUAUAUacaagugAGCAUAGCAAAUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 135821 0.69 0.999897
Target:  5'- cACCUAAGCUAUAUauAGCuUAGguGu-- -3'
miRNA:   3'- -UGGAUUCGAUAUG--UCGuAUCguUuau -5'
28255 5' -44.4 NC_005902.1 + 133683 0.74 0.990588
Target:  5'- cACCUAAGCUAUAUA-CAaauaaaugUAGCGAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUGUcGU--------AUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 131673 0.69 0.999864
Target:  5'- cACCUAAGCUAUACAuacaCAaaugAGCAuAUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGUc---GUa---UCGUuUAU- -5'
28255 5' -44.4 NC_005902.1 + 131079 0.69 0.999864
Target:  5'- uUCUAAgGCuUAUACaaguaAGCAUAGCAAAUGa -3'
miRNA:   3'- uGGAUU-CG-AUAUG-----UCGUAUCGUUUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.