miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28255 5' -44.4 NC_005902.1 + 73105 0.72 0.997394
Target:  5'- aACCUAAaUUAUAUauaagcaAGCAUAGCAAGUAa -3'
miRNA:   3'- -UGGAUUcGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 3385 0.74 0.989158
Target:  5'- cACCUAAGCUAUACAuacaaCAUAGCu---- -3'
miRNA:   3'- -UGGAUUCGAUAUGUc----GUAUCGuuuau -5'
28255 5' -44.4 NC_005902.1 + 78086 0.77 0.955733
Target:  5'- cCUUAAGCUAUAUaugacuaAGUAUAGCGAAUAa -3'
miRNA:   3'- uGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 116959 0.8 0.851202
Target:  5'- uCUUAAGCUAUAUacaaguaAGCAUAGCAAAUGu -3'
miRNA:   3'- uGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 153654 0.68 0.999941
Target:  5'- cACUUAAaCUAUAUacgaacaAGCGUAGCGAGUGa -3'
miRNA:   3'- -UGGAUUcGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 105951 0.7 0.999391
Target:  5'- cACCUAAGCUAUAUAcaaauaaauGCAaugAGUGAGUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGU---------CGUa--UCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 97184 0.75 0.981462
Target:  5'- cACCUAAGCUAUAUaugaaugAGgAUAGUGAGUAa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCgUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 81290 0.8 0.842356
Target:  5'- cAUCUAAGCUAUAUacaaauaAGUAUAGCAAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 163457 0.7 0.999391
Target:  5'- uCCUAAgGCUAUAUaaguaAGUAUAGCAAAc- -3'
miRNA:   3'- uGGAUU-CGAUAUG-----UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 98644 0.81 0.833277
Target:  5'- uACCUAAGCUAUAUacaagugAGCAcAGCGAAUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUaUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 93434 0.74 0.987564
Target:  5'- uAUUUAAGCUAUG-AGCAUAGUGAAUAa -3'
miRNA:   3'- -UGGAUUCGAUAUgUCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 80743 0.72 0.997442
Target:  5'- cACCUAAGCUAUAUAcaaacaaauGCAgugAGUggGUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGU---------CGUa--UCGuuUAU- -5'
28255 5' -44.4 NC_005902.1 + 147599 0.75 0.973647
Target:  5'- cACCUAAGCUAUAUauaaaugAGCGcAGUAAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUaUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 91866 0.77 0.955733
Target:  5'- cACCUAAGCUAUAUacaaauaAGaGUAGCAAAUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCgUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 110920 0.78 0.918996
Target:  5'- uACCUAAGCUAUAUaugagugGGUAUAGUAAGUu -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAu -5'
28255 5' -44.4 NC_005902.1 + 109925 0.8 0.860651
Target:  5'- gACCUAAGCUAUAU-GCAaacaUAGCGAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUGuCGU----AUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 167164 0.68 0.999969
Target:  5'- cACCUAAGCUAUAUacuuaAGCGUauauAGCuuAGGUGu -3'
miRNA:   3'- -UGGAUUCGAUAUG-----UCGUA----UCG--UUUAU- -5'
28255 5' -44.4 NC_005902.1 + 61629 0.68 0.999943
Target:  5'- cAUCUAAGCUAUAUacaaaugauugAGUAUAGCuuAGAUGu -3'
miRNA:   3'- -UGGAUUCGAUAUG-----------UCGUAUCG--UUUAU- -5'
28255 5' -44.4 NC_005902.1 + 169556 0.69 0.999822
Target:  5'- uGCUUAAGCUAUAUA-CAU-GCGAGUGu -3'
miRNA:   3'- -UGGAUUCGAUAUGUcGUAuCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 39105 0.69 0.999817
Target:  5'- cACCUAAGCUAUAUacaaacaAGUGUuGCAAAc- -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAuCGUUUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.