miRNA display CGI


Results 1 - 20 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28255 5' -44.4 NC_005902.1 + 182572 0.71 0.998535
Target:  5'- cACCUAAGCUAUAUacaaaugAGCAUAaCAAAc- -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUcGUUUau -5'
28255 5' -44.4 NC_005902.1 + 181400 0.68 0.999969
Target:  5'- cCCUAAGUUAUAUaaacuAGCAUaaagAGUAAGUAu -3'
miRNA:   3'- uGGAUUCGAUAUG-----UCGUA----UCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 178372 0.69 0.999897
Target:  5'- uACCUAAGCUAUAUA-CA-AGCAuAUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGUcGUaUCGUuUAU- -5'
28255 5' -44.4 NC_005902.1 + 177899 0.77 0.946677
Target:  5'- -aCUAAGCUAUAUacgagugAGCAUAGCAAAc- -3'
miRNA:   3'- ugGAUUCGAUAUG-------UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 177836 0.82 0.774479
Target:  5'- uGCCUAAGCUAUAUacaagugAGCAUAGUAAAc- -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 175895 0.76 0.964052
Target:  5'- gACCUGAGCUAUAUacaAGUaaauAUAGCAAAUu -3'
miRNA:   3'- -UGGAUUCGAUAUG---UCG----UAUCGUUUAu -5'
28255 5' -44.4 NC_005902.1 + 174601 0.77 0.951346
Target:  5'- cACCUAAGCUAUAUacgaaugAGCAcAGCAAAc- -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUaUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 172824 0.81 0.833277
Target:  5'- cACCUAAGCUAUAUaugaguaAGCAUcGCAAAUGg -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAuCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 169556 0.69 0.999822
Target:  5'- uGCUUAAGCUAUAUA-CAU-GCGAGUGu -3'
miRNA:   3'- -UGGAUUCGAUAUGUcGUAuCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 167164 0.68 0.999969
Target:  5'- cACCUAAGCUAUAUacuuaAGCGUauauAGCuuAGGUGu -3'
miRNA:   3'- -UGGAUUCGAUAUG-----UCGUA----UCG--UUUAU- -5'
28255 5' -44.4 NC_005902.1 + 165896 0.75 0.979328
Target:  5'- cACCUAAGCUAUAUAcGaauaaauGUAGCAAAUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGU-Cg------UAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 165725 0.75 0.976749
Target:  5'- cACCUAAGCUAUAUauacaaauaAGCGcAGUAAGUAu -3'
miRNA:   3'- -UGGAUUCGAUAUG---------UCGUaUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 164707 0.69 0.999864
Target:  5'- uGCCUAAGCUAUAaa-UAUAGUAAGa- -3'
miRNA:   3'- -UGGAUUCGAUAUgucGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 163517 0.68 0.999923
Target:  5'- cAUCUAAGCUAUAaacaAGCGUAuuGAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUg---UCGUAUcgUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 163457 0.7 0.999391
Target:  5'- uCCUAAgGCUAUAUaaguaAGUAUAGCAAAc- -3'
miRNA:   3'- uGGAUU-CGAUAUG-----UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 162543 0.66 0.999999
Target:  5'- cACUUAAGCUAUAUacaacugAGUAUguaAGUAAGUAu -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUA---UCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 161001 0.74 0.989158
Target:  5'- uAUCUAAGCUAUAUAcaaaUAUAGCAAAUAa -3'
miRNA:   3'- -UGGAUUCGAUAUGUc---GUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 159749 0.9 0.379282
Target:  5'- uACCUAAGCUAUAUauaaaugAGCGUAGCAAGUAa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 158341 0.81 0.824914
Target:  5'- uACCUAGGCUgcuauAUACuaacaAGCGUAGCAAAUAa -3'
miRNA:   3'- -UGGAUUCGA-----UAUG-----UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 157237 0.67 0.999984
Target:  5'- cACCUAAGCUAUAUA-CAaaagAGCAcaGAUGu -3'
miRNA:   3'- -UGGAUUCGAUAUGUcGUa---UCGU--UUAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.