miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28255 5' -44.4 NC_005902.1 + 165896 0.75 0.979328
Target:  5'- cACCUAAGCUAUAUAcGaauaaauGUAGCAAAUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGU-Cg------UAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 137782 0.75 0.979328
Target:  5'- cACCUAAGCUAUAUauacaaauaAGUAUagugAGCAAAUAu -3'
miRNA:   3'- -UGGAUUCGAUAUG---------UCGUA----UCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 97184 0.75 0.981462
Target:  5'- cACCUAAGCUAUAUaugaaugAGgAUAGUGAGUAa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCgUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 93434 0.74 0.987564
Target:  5'- uAUUUAAGCUAUG-AGCAUAGUGAAUAa -3'
miRNA:   3'- -UGGAUUCGAUAUgUCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 161001 0.74 0.989158
Target:  5'- uAUCUAAGCUAUAUAcaaaUAUAGCAAAUAa -3'
miRNA:   3'- -UGGAUUCGAUAUGUc---GUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 3385 0.74 0.989158
Target:  5'- cACCUAAGCUAUACAuacaaCAUAGCu---- -3'
miRNA:   3'- -UGGAUUCGAUAUGUc----GUAUCGuuuau -5'
28255 5' -44.4 NC_005902.1 + 133683 0.74 0.990588
Target:  5'- cACCUAAGCUAUAUA-CAaauaaaugUAGCGAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUGUcGU--------AUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 39417 0.73 0.993001
Target:  5'- uACCUAAGCUAUAUacgaguaaauguAGUA-AGCAAGUAu -3'
miRNA:   3'- -UGGAUUCGAUAUG------------UCGUaUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 23317 0.73 0.993001
Target:  5'- cAUCUAAGCUAUAUguaAGCAUuGCAAAc- -3'
miRNA:   3'- -UGGAUUCGAUAUG---UCGUAuCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 93720 0.73 0.994006
Target:  5'- uACCUAAGCUAUAUagaacaAGUGUAGUAAu-- -3'
miRNA:   3'- -UGGAUUCGAUAUG------UCGUAUCGUUuau -5'
28255 5' -44.4 NC_005902.1 + 29221 0.72 0.996879
Target:  5'- cACCUAAGCUAUAUaugaacaAGUAUAaCAAAUAa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUcGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 73105 0.72 0.997394
Target:  5'- aACCUAAaUUAUAUauaagcaAGCAUAGCAAGUAa -3'
miRNA:   3'- -UGGAUUcGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 80743 0.72 0.997442
Target:  5'- cACCUAAGCUAUAUAcaaacaaauGCAgugAGUggGUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGU---------CGUa--UCGuuUAU- -5'
28255 5' -44.4 NC_005902.1 + 67715 0.72 0.997877
Target:  5'- uCCUAGGCUAUAUAGaaauUAGCAu--- -3'
miRNA:   3'- uGGAUUCGAUAUGUCgu--AUCGUuuau -5'
28255 5' -44.4 NC_005902.1 + 16885 0.72 0.997877
Target:  5'- cACCUAAGCUAUAUcaaguaAGCAUAuCAAAc- -3'
miRNA:   3'- -UGGAUUCGAUAUG------UCGUAUcGUUUau -5'
28255 5' -44.4 NC_005902.1 + 182572 0.71 0.998535
Target:  5'- cACCUAAGCUAUAUacaaaugAGCAUAaCAAAc- -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUcGUUUau -5'
28255 5' -44.4 NC_005902.1 + 43854 0.71 0.998535
Target:  5'- uUUUAAGCUAUAUacaaacaAGUGUAGCAAAUAa -3'
miRNA:   3'- uGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 163457 0.7 0.999391
Target:  5'- uCCUAAgGCUAUAUaaguaAGUAUAGCAAAc- -3'
miRNA:   3'- uGGAUU-CGAUAUG-----UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 105951 0.7 0.999391
Target:  5'- cACCUAAGCUAUAUAcaaauaaauGCAaugAGUGAGUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGU---------CGUa--UCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 36808 0.7 0.999702
Target:  5'- cACUUAAGCUAUACAcagauagauGCA--GCAAAUGa -3'
miRNA:   3'- -UGGAUUCGAUAUGU---------CGUauCGUUUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.