miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28255 5' -44.4 NC_005902.1 + 135821 0.69 0.999897
Target:  5'- cACCUAAGCUAUAUauAGCuUAGguGu-- -3'
miRNA:   3'- -UGGAUUCGAUAUG--UCGuAUCguUuau -5'
28255 5' -44.4 NC_005902.1 + 164707 0.69 0.999864
Target:  5'- uGCCUAAGCUAUAaa-UAUAGUAAGa- -3'
miRNA:   3'- -UGGAUUCGAUAUgucGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 54946 0.69 0.999864
Target:  5'- uACUUAAGCUAUauaugaACAGaUAUAGUGAGUGa -3'
miRNA:   3'- -UGGAUUCGAUA------UGUC-GUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 131673 0.69 0.999864
Target:  5'- cACCUAAGCUAUACAuacaCAaaugAGCAuAUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGUc---GUa---UCGUuUAU- -5'
28255 5' -44.4 NC_005902.1 + 131079 0.69 0.999864
Target:  5'- uUCUAAgGCuUAUACaaguaAGCAUAGCAAAUGa -3'
miRNA:   3'- uGGAUU-CG-AUAUG-----UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 117738 0.69 0.999864
Target:  5'- cAUCUAAGCUAUAU-GCA-AGUAAGUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGuCGUaUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 15432 0.69 0.999861
Target:  5'- cACCUAAGCUAUAUauaaauaAGCAUauauaGGuCAGGUGu -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUA-----UC-GUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 169556 0.69 0.999822
Target:  5'- uGCUUAAGCUAUAUA-CAU-GCGAGUGu -3'
miRNA:   3'- -UGGAUUCGAUAUGUcGUAuCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 56216 0.69 0.999822
Target:  5'- cGCCUAAuaUAU-CAGCAUGGgAAGUGu -3'
miRNA:   3'- -UGGAUUcgAUAuGUCGUAUCgUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 58626 0.69 0.999817
Target:  5'- gACUUAAGCUGUAUauaaacaAGCGUAaCAAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUcGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 116640 0.69 0.999817
Target:  5'- cACCUAAGCUAUAUacaagugAGUAUaauaAGCAuAUAg -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUA----UCGUuUAU- -5'
28255 5' -44.4 NC_005902.1 + 39105 0.69 0.999817
Target:  5'- cACCUAAGCUAUAUacaaacaAGUGUuGCAAAc- -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAuCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 58821 0.69 0.999769
Target:  5'- aACUUAAGCUAUA-AGCAaAGCAuAUAc -3'
miRNA:   3'- -UGGAUUCGAUAUgUCGUaUCGUuUAU- -5'
28255 5' -44.4 NC_005902.1 + 18865 0.69 0.999769
Target:  5'- cACCUAAGCUAUAUAcGCuuaAGUAuAUAg -3'
miRNA:   3'- -UGGAUUCGAUAUGU-CGua-UCGUuUAU- -5'
28255 5' -44.4 NC_005902.1 + 81845 0.69 0.999763
Target:  5'- cACCUAAGCUAUAUAaacaaauGCuaAGUAAGUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGU-------CGuaUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 49443 0.7 0.999702
Target:  5'- cACCUAAGUUAUAaauaGGgGcAGCAAAUAa -3'
miRNA:   3'- -UGGAUUCGAUAUg---UCgUaUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 36808 0.7 0.999702
Target:  5'- cACUUAAGCUAUACAcagauagauGCA--GCAAAUGa -3'
miRNA:   3'- -UGGAUUCGAUAUGU---------CGUauCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 105951 0.7 0.999391
Target:  5'- cACCUAAGCUAUAUAcaaauaaauGCAaugAGUGAGUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGU---------CGUa--UCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 163457 0.7 0.999391
Target:  5'- uCCUAAgGCUAUAUaaguaAGUAUAGCAAAc- -3'
miRNA:   3'- uGGAUU-CGAUAUG-----UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 182572 0.71 0.998535
Target:  5'- cACCUAAGCUAUAUacaaaugAGCAUAaCAAAc- -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUcGUUUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.