miRNA display CGI


Results 81 - 100 of 429 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28256 3' -42 NC_005902.1 + 81285 0.71 0.99999
Target:  5'- ---gUUAACAUCUAAGCUAUAUAc-- -3'
miRNA:   3'- gggaAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 97720 0.71 0.999986
Target:  5'- aCCCUU---UAUCUAAGCUAUAUAUu- -3'
miRNA:   3'- -GGGAAauuGUGGAUUCGAUAUGUAug -5'
28256 3' -42 NC_005902.1 + 69371 0.71 0.999985
Target:  5'- aCCgUUUAACACCUAAaCUAUAUgcuuauuAUACu -3'
miRNA:   3'- -GGgAAAUUGUGGAUUcGAUAUG-------UAUG- -5'
28256 3' -42 NC_005902.1 + 163495 0.71 0.999984
Target:  5'- gCCUuaggauuuaaaggaUUAACAUCUAAGCUAUaaACAaGCg -3'
miRNA:   3'- gGGA--------------AAUUGUGGAUUCGAUA--UGUaUG- -5'
28256 3' -42 NC_005902.1 + 1203 0.72 0.99998
Target:  5'- ---gUUAACACCUAAGUUAUAUAc-- -3'
miRNA:   3'- gggaAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 10386 0.72 0.999972
Target:  5'- cCCCUUUAAUACUUAAaCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUcGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 25068 0.72 0.999972
Target:  5'- cCCCUUUAACuCCUaAAGCguuguugacgAUACAUAg -3'
miRNA:   3'- -GGGAAAUUGuGGA-UUCGa---------UAUGUAUg -5'
28256 3' -42 NC_005902.1 + 28790 0.72 0.999972
Target:  5'- aUCCUUUAACAUCUGuGCUcuuuuGUAUAUAg -3'
miRNA:   3'- -GGGAAAUUGUGGAUuCGA-----UAUGUAUg -5'
28256 3' -42 NC_005902.1 + 164701 0.72 0.999972
Target:  5'- --aUUUAAUGCCUAAGCUAUAaAUAUa -3'
miRNA:   3'- gggAAAUUGUGGAUUCGAUAUgUAUG- -5'
28256 3' -42 NC_005902.1 + 104717 0.72 0.999972
Target:  5'- aUCCUUUAACuuUUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGugGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 58308 0.72 0.999972
Target:  5'- aCCCUUUAACAUUUAAaCUAUACuuguuuuUACu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUcGAUAUGu------AUG- -5'
28256 3' -42 NC_005902.1 + 169983 0.72 0.999962
Target:  5'- aCCCUU---UAUCUAAGCUAUAUAUuCa -3'
miRNA:   3'- -GGGAAauuGUGGAUUCGAUAUGUAuG- -5'
28256 3' -42 NC_005902.1 + 93714 0.72 0.999962
Target:  5'- aUCCUU---UACCUAAGCUAUAUAg-- -3'
miRNA:   3'- -GGGAAauuGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 57236 0.72 0.999962
Target:  5'- aCUCUUUAACAUCUuAGCUGUGaGUGu -3'
miRNA:   3'- -GGGAAAUUGUGGAuUCGAUAUgUAUg -5'
28256 3' -42 NC_005902.1 + 73038 0.72 0.999962
Target:  5'- aCCCUUUAAUACUUAAGUaAUAUuguuuguuAUGCu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGaUAUG--------UAUG- -5'
28256 3' -42 NC_005902.1 + 90423 0.72 0.999962
Target:  5'- -aCUUUAACAUCUAAG-UGUAUAUAUa -3'
miRNA:   3'- ggGAAAUUGUGGAUUCgAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 111170 0.72 0.999962
Target:  5'- aCCCUUUAACuCCUAAugcGUUGUugAUGa -3'
miRNA:   3'- -GGGAAAUUGuGGAUU---CGAUAugUAUg -5'
28256 3' -42 NC_005902.1 + 162722 0.72 0.999962
Target:  5'- aCCUU--AUACCUAAGCU--ACAUAUu -3'
miRNA:   3'- gGGAAauUGUGGAUUCGAuaUGUAUG- -5'
28256 3' -42 NC_005902.1 + 169551 0.72 0.999948
Target:  5'- ---gUUAAUGCUUAAGCUAuaUACAUGCg -3'
miRNA:   3'- gggaAAUUGUGGAUUCGAU--AUGUAUG- -5'
28256 3' -42 NC_005902.1 + 136411 0.72 0.999948
Target:  5'- aCCCUUUAACcCCUAAGgCU-UAUAUAa -3'
miRNA:   3'- -GGGAAAUUGuGGAUUC-GAuAUGUAUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.