miRNA display CGI


Results 61 - 80 of 429 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28256 3' -42 NC_005902.1 + 8414 0.7 0.999998
Target:  5'- aCUUUUUAACACCUAAaCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUcGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 173873 0.7 0.999998
Target:  5'- aCCUuaggauuuauagagUUAAUACUUAAGCUAUauacucauuuaACAUGCu -3'
miRNA:   3'- gGGA--------------AAUUGUGGAUUCGAUA-----------UGUAUG- -5'
28256 3' -42 NC_005902.1 + 135988 0.7 0.999998
Target:  5'- aUCUUUUAACACCUAAG-UAUAUucACu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCgAUAUGuaUG- -5'
28256 3' -42 NC_005902.1 + 76204 0.7 0.999998
Target:  5'- -aUUUUAAUACUUAAGCUAUAUAc-- -3'
miRNA:   3'- ggGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 15310 0.7 0.999998
Target:  5'- ---aUUAACACCUGAaUUAUAUAUGCa -3'
miRNA:   3'- gggaAAUUGUGGAUUcGAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 15695 0.7 0.999998
Target:  5'- aCUUUUAACACCUAAGauuUAUAgACa -3'
miRNA:   3'- gGGAAAUUGUGGAUUCgauAUGUaUG- -5'
28256 3' -42 NC_005902.1 + 127634 0.7 0.999998
Target:  5'- aCCCUU---UAUUUAAGCUAUAUAUAa -3'
miRNA:   3'- -GGGAAauuGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 78077 0.7 0.999998
Target:  5'- aUUUUUAACcCUUAAGCUAUAUAUGa -3'
miRNA:   3'- gGGAAAUUGuGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 140055 0.7 0.999998
Target:  5'- --aUUUAAUACUUAAGCUAUAUAUu- -3'
miRNA:   3'- gggAAAUUGUGGAUUCGAUAUGUAug -5'
28256 3' -42 NC_005902.1 + 163447 0.7 0.999997
Target:  5'- aCCCUUUAAauCCUAAGgCUAUAUAa-- -3'
miRNA:   3'- -GGGAAAUUguGGAUUC-GAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 58535 0.71 0.999995
Target:  5'- -gCUUUAACACUgAAGCUAUAUAc-- -3'
miRNA:   3'- ggGAAAUUGUGGaUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 43525 0.71 0.999995
Target:  5'- aCCUUUUAACAUCUAAcCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUcGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 103987 0.71 0.999995
Target:  5'- aCCaUUUAAUAUUUAAGCUAUAUAUucACu -3'
miRNA:   3'- gGG-AAAUUGUGGAUUCGAUAUGUA--UG- -5'
28256 3' -42 NC_005902.1 + 11043 0.71 0.999995
Target:  5'- ---gUUAACACUUAAGUUAUAUAUGa -3'
miRNA:   3'- gggaAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 37198 0.71 0.999995
Target:  5'- aCCUUUUAAUACauauuUAAGCUAUAUAUucACu -3'
miRNA:   3'- -GGGAAAUUGUGg----AUUCGAUAUGUA--UG- -5'
28256 3' -42 NC_005902.1 + 94701 0.71 0.999993
Target:  5'- aUC-UUAAUACCUAAGCUAU--GUACa -3'
miRNA:   3'- gGGaAAUUGUGGAUUCGAUAugUAUG- -5'
28256 3' -42 NC_005902.1 + 76023 0.71 0.999993
Target:  5'- aCCCUUUAACuCCUAAGgUAUuaucaauaAUGCu -3'
miRNA:   3'- -GGGAAAUUGuGGAUUCgAUAug------UAUG- -5'
28256 3' -42 NC_005902.1 + 154914 0.71 0.999993
Target:  5'- aUCUUUUAACAUCcAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGaUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 100155 0.71 0.99999
Target:  5'- aCCUUUUuAUGCCUAAGUUAUAUAc-- -3'
miRNA:   3'- -GGGAAAuUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 81285 0.71 0.99999
Target:  5'- ---gUUAACAUCUAAGCUAUAUAc-- -3'
miRNA:   3'- gggaAAUUGUGGAUUCGAUAUGUaug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.