Results 41 - 60 of 429 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28256 | 3' | -42 | NC_005902.1 | + | 177828 | 0.66 | 1 |
Target: 5'- ---aUUAACuuuGCCUAAGCUAUAUAc-- -3' miRNA: 3'- gggaAAUUG---UGGAUUCGAUAUGUaug -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 26885 | 0.66 | 1 |
Target: 5'- aCCUUUuAUGCCUGGuGCUAUGUGUAUc -3' miRNA: 3'- gGGAAAuUGUGGAUU-CGAUAUGUAUG- -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 43845 | 0.66 | 1 |
Target: 5'- uUCUUUAACuuUUAAGCUAUAUAc-- -3' miRNA: 3'- gGGAAAUUGugGAUUCGAUAUGUaug -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 23414 | 0.67 | 1 |
Target: 5'- ---gUUAACACCcAAGCUAUAUacaaacaaGUACa -3' miRNA: 3'- gggaAAUUGUGGaUUCGAUAUG--------UAUG- -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 98888 | 0.67 | 1 |
Target: 5'- ---aUUAACuCCUAAGUUAUAUAUAa -3' miRNA: 3'- gggaAAUUGuGGAUUCGAUAUGUAUg -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 184807 | 0.68 | 1 |
Target: 5'- aCUCUUcAACACUUAAaacaUAUACAUGCu -3' miRNA: 3'- -GGGAAaUUGUGGAUUcg--AUAUGUAUG- -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 140686 | 0.68 | 1 |
Target: 5'- cUCUUUUAACAUCcAAGCUAUAaauaaAUAUa -3' miRNA: 3'- -GGGAAAUUGUGGaUUCGAUAUg----UAUG- -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 22553 | 0.68 | 1 |
Target: 5'- aUCCUUUAAauCCUAAgGCUAUACuuguuUGCu -3' miRNA: 3'- -GGGAAAUUguGGAUU-CGAUAUGu----AUG- -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 77101 | 0.68 | 1 |
Target: 5'- ----cUAACACUUAAGCU-UAUAUACu -3' miRNA: 3'- gggaaAUUGUGGAUUCGAuAUGUAUG- -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 118825 | 0.68 | 1 |
Target: 5'- aCUCUUUAACuCCUAAggcauuGUUAUugAUGCc -3' miRNA: 3'- -GGGAAAUUGuGGAUU------CGAUAugUAUG- -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 111390 | 0.67 | 1 |
Target: 5'- uCgCUUUAACaccACCUAAGUUAUAUAc-- -3' miRNA: 3'- -GgGAAAUUG---UGGAUUCGAUAUGUaug -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 162808 | 0.67 | 1 |
Target: 5'- ---gUUAAUAUCUAAGCU-UGCAUAUa -3' miRNA: 3'- gggaAAUUGUGGAUUCGAuAUGUAUG- -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 62673 | 0.67 | 1 |
Target: 5'- cCCCUUUAAaacUAUCUAaaaaAGCUGUAUuugACa -3' miRNA: 3'- -GGGAAAUU---GUGGAU----UCGAUAUGua-UG- -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 68959 | 0.67 | 1 |
Target: 5'- ---gUUAAUACUUAAGCUAUAUAa-- -3' miRNA: 3'- gggaAAUUGUGGAUUCGAUAUGUaug -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 24305 | 0.68 | 1 |
Target: 5'- aCUCUUUAACA-CUAGGCcAUACAc-- -3' miRNA: 3'- -GGGAAAUUGUgGAUUCGaUAUGUaug -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 39414 | 0.68 | 1 |
Target: 5'- -----gAAUACCUAAGCUAUAUAc-- -3' miRNA: 3'- gggaaaUUGUGGAUUCGAUAUGUaug -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 136893 | 0.7 | 0.999999 |
Target: 5'- --aUUUAACACCcAAGUUAUAUAUAa -3' miRNA: 3'- gggAAAUUGUGGaUUCGAUAUGUAUg -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 117075 | 0.7 | 0.999999 |
Target: 5'- aCCCUUUAAUGuuUAAGCU-UGC-UACa -3' miRNA: 3'- -GGGAAAUUGUggAUUCGAuAUGuAUG- -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 67359 | 0.7 | 0.999999 |
Target: 5'- aCCUUUUAACAaCUAAGUUAgaUACAaACa -3' miRNA: 3'- -GGGAAAUUGUgGAUUCGAU--AUGUaUG- -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 90592 | 0.7 | 0.999999 |
Target: 5'- gCCUuaggauuuaaagggUUAACACCUAAGCUugcugauuguucAUAUAUAa -3' miRNA: 3'- gGGA--------------AAUUGUGGAUUCGA------------UAUGUAUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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