miRNA display CGI


Results 41 - 60 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28256 3' -42 NC_005902.1 + 140686 0.68 1
Target:  5'- cUCUUUUAACAUCcAAGCUAUAaauaaAUAUa -3'
miRNA:   3'- -GGGAAAUUGUGGaUUCGAUAUg----UAUG- -5'
28256 3' -42 NC_005902.1 + 24305 0.68 1
Target:  5'- aCUCUUUAACA-CUAGGCcAUACAc-- -3'
miRNA:   3'- -GGGAAAUUGUgGAUUCGaUAUGUaug -5'
28256 3' -42 NC_005902.1 + 77101 0.68 1
Target:  5'- ----cUAACACUUAAGCU-UAUAUACu -3'
miRNA:   3'- gggaaAUUGUGGAUUCGAuAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 22553 0.68 1
Target:  5'- aUCCUUUAAauCCUAAgGCUAUACuuguuUGCu -3'
miRNA:   3'- -GGGAAAUUguGGAUU-CGAUAUGu----AUG- -5'
28256 3' -42 NC_005902.1 + 39414 0.68 1
Target:  5'- -----gAAUACCUAAGCUAUAUAc-- -3'
miRNA:   3'- gggaaaUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 184807 0.68 1
Target:  5'- aCUCUUcAACACUUAAaacaUAUACAUGCu -3'
miRNA:   3'- -GGGAAaUUGUGGAUUcg--AUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 118825 0.68 1
Target:  5'- aCUCUUUAACuCCUAAggcauuGUUAUugAUGCc -3'
miRNA:   3'- -GGGAAAUUGuGGAUU------CGAUAugUAUG- -5'
28256 3' -42 NC_005902.1 + 27864 0.68 1
Target:  5'- aCCCUUUAaaucuuaaggcuuAUACUUGuuuGCUAUACuUACu -3'
miRNA:   3'- -GGGAAAU-------------UGUGGAUu--CGAUAUGuAUG- -5'
28256 3' -42 NC_005902.1 + 160882 0.69 1
Target:  5'- --aUUUAACcCCUAAGCUAUAUAc-- -3'
miRNA:   3'- gggAAAUUGuGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 174974 0.69 1
Target:  5'- ----cUAACACUUAAGCUAUAUAc-- -3'
miRNA:   3'- gggaaAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 6254 0.69 1
Target:  5'- ---gUUAACACCgAAGCcAUAUAUACa -3'
miRNA:   3'- gggaAAUUGUGGaUUCGaUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 167434 0.69 1
Target:  5'- aCCUuuUUAACuCCUAAGUUAUAUAa-- -3'
miRNA:   3'- gGGA--AAUUGuGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 72396 0.69 1
Target:  5'- uCUUUUUAAUAUUUAAGCUA-AUAUACa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUaUGUAUG- -5'
28256 3' -42 NC_005902.1 + 93988 0.69 1
Target:  5'- aCUUUUuaAACAUCUAAGCUAU--GUACu -3'
miRNA:   3'- gGGAAA--UUGUGGAUUCGAUAugUAUG- -5'
28256 3' -42 NC_005902.1 + 100523 0.69 1
Target:  5'- aCUUUUUGACACCUAAuCUAUaaACAaGCa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUcGAUA--UGUaUG- -5'
28256 3' -42 NC_005902.1 + 73850 0.69 1
Target:  5'- aCCUUUUAACACaUAAGCaUAUACucACu -3'
miRNA:   3'- -GGGAAAUUGUGgAUUCG-AUAUGuaUG- -5'
28256 3' -42 NC_005902.1 + 15695 0.7 0.999998
Target:  5'- aCUUUUAACACCUAAGauuUAUAgACa -3'
miRNA:   3'- gGGAAAUUGUGGAUUCgauAUGUaUG- -5'
28256 3' -42 NC_005902.1 + 76204 0.7 0.999998
Target:  5'- -aUUUUAAUACUUAAGCUAUAUAc-- -3'
miRNA:   3'- ggGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 8414 0.7 0.999998
Target:  5'- aCUUUUUAACACCUAAaCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUcGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 78077 0.7 0.999998
Target:  5'- aUUUUUAACcCUUAAGCUAUAUAUGa -3'
miRNA:   3'- gGGAAAUUGuGGAUUCGAUAUGUAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.