miRNA display CGI


Results 41 - 60 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28256 3' -42 NC_005902.1 + 135812 0.97 0.329288
Target:  5'- gCUCUUUAACACCUAAGCUAUAUAUAg -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 21167 0.97 0.337544
Target:  5'- uCCCUUUAACACUUAAGCUAUAUAUGa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 40967 0.97 0.354503
Target:  5'- aCCCUUUAAUACCUAAGCUAUAUAcACu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaUG- -5'
28256 3' -42 NC_005902.1 + 113784 0.96 0.363205
Target:  5'- aCCCUUUAACAaCUAAGCUAUAUAUACa -3'
miRNA:   3'- -GGGAAAUUGUgGAUUCGAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 44014 0.96 0.381049
Target:  5'- aCCUUUUAACACCUAAGCUAUAUAcACg -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaUG- -5'
28256 3' -42 NC_005902.1 + 116943 0.96 0.381049
Target:  5'- aCCCUUUAACACCUAGGUUAUAUAaACa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaUG- -5'
28256 3' -42 NC_005902.1 + 30797 0.96 0.390188
Target:  5'- aCCCUUUAACAUCUAAGCUAUAUAcGCu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaUG- -5'
28256 3' -42 NC_005902.1 + 18856 0.95 0.399469
Target:  5'- aCCUUUUAACACCUAAGCUAUAUAcGCu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaUG- -5'
28256 3' -42 NC_005902.1 + 50043 0.95 0.399469
Target:  5'- aCCCUUUAACACCUAAGCUAUGuucauuugcUAUGCu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAU---------GUAUG- -5'
28256 3' -42 NC_005902.1 + 45078 0.95 0.40889
Target:  5'- aCCUUUUAACACCUAAGCUAUAUAcuUACu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGU--AUG- -5'
28256 3' -42 NC_005902.1 + 23287 0.95 0.40889
Target:  5'- aUCCUUUAAUACCUAAGCUAUAUAUGa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 166127 0.95 0.40889
Target:  5'- aCCCUUUAAUACUUAAGCUAuaUACAUGCu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAU--AUGUAUG- -5'
28256 3' -42 NC_005902.1 + 165945 0.95 0.428141
Target:  5'- aCCUUUUAAUACUUAAGCUAUAUAUACa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 156548 0.95 0.428141
Target:  5'- cCCUUUUAACACCUAAGCUAUAUAuuUACu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGU--AUG- -5'
28256 3' -42 NC_005902.1 + 109795 0.95 0.428141
Target:  5'- aCCCUUUAACACCUAAGUUAUAUAUu- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAug -5'
28256 3' -42 NC_005902.1 + 31416 0.95 0.437965
Target:  5'- aCCCUUUAAUACCUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 146733 0.94 0.447917
Target:  5'- aUCCUUUAACACCUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 71603 0.94 0.447917
Target:  5'- aUCCUUUAACACCUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 169442 0.94 0.457994
Target:  5'- aCCCUUUAACACUUAAGCUGUAUAUu- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAug -5'
28256 3' -42 NC_005902.1 + 54937 0.94 0.478502
Target:  5'- aCCCUUUAAUACUUAAGCUAUAUAUGa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.