miRNA display CGI


Results 21 - 40 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28256 3' -42 NC_005902.1 + 91857 0.99 0.275698
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 13182 0.99 0.275698
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 165887 0.99 0.275698
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 105264 0.99 0.275698
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 137773 0.99 0.275698
Target:  5'- aCUUUUUAACACCUAAGCUAUAUAUACa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 157228 0.99 0.275698
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 162389 0.99 0.275698
Target:  5'- uCCCUUUAACACCUAAGCU--ACAUACu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAuaUGUAUG- -5'
28256 3' -42 NC_005902.1 + 143773 0.99 0.275698
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 128772 0.99 0.275698
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 99556 0.99 0.275698
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 109358 0.99 0.282906
Target:  5'- aCCCUUUAACACUUAAGCUAUAUAUAa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 71656 0.99 0.282906
Target:  5'- aCCCUUUAACACUUAAGUUAUAUAUGCu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 137751 0.99 0.282906
Target:  5'- aCCCUUUAACACUUAAGCUAUAUAUAa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 167155 0.98 0.305422
Target:  5'- uCCCUUUAACACCUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 40065 0.98 0.305422
Target:  5'- aCCCUUUAACACUUAAGCUAUAUAUGa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 15423 0.98 0.305422
Target:  5'- aCUCUUUAACACCUAAGCUAUAUAUAa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 85905 0.98 0.313228
Target:  5'- cCCCUUUAACAUCUAAGCUAUAUAUGa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 99985 0.98 0.313228
Target:  5'- cCCCUUUAACAUCUAAGCUAUAUAUGa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 29212 0.97 0.329288
Target:  5'- aCUCUUUAACACCUAAGCUAUAUAUGa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 135812 0.97 0.329288
Target:  5'- gCUCUUUAACACCUAAGCUAUAUAUAg -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.